F19003

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19003

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19003

Determination of introduced cDNA(s)

  • RAFL05-13-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-D04 - Resource: pda02562

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-D04 - full reading 
    GTAAAACTTA CATAATGGGA ATGGTTTTTG GTAAAATCGC TGTAGAGACT 
    CCTAAATACA CGGTGACTAA ATCCGGTGAC GGTTATGAGA TCCGTGAATA 
    TCCACCAGCG GTTGCGGCGG AGGTTACATA CGATGCGTCG GAGTTCAAAG 
    GTGATAAAGA CGGAGGCTTT CAGCTTTTGG CTAAGTACAT AGGTGTGTTT 
    GGCAAACCGG AGAATGAGAA ACCGGAGAAA ATTGCTATGA CTGCACCGGT 
    GATCACTAAG GAAGGTGAGA AGATTGCGAT GACTGCTCCG GTGATTACTA 
    AGGAGAGTGA GAAGATTGAG ATGACTTCTC CGGTTGTAAC TAAGGAAGGT 
    GGTGGAGAAG GAAGGAAGAA GTTGGTGACG ATGCAGTTTT TGTTGCCGTC 
    GATGTATAAG AAGGCGGAGG AGGCACCACG TCCAACGGAT GAGAGGGTTG 
    TGATTAAGGA GGAAGGAGGG AGGAAGTATG GTGTGATTAA GTTTAGTGGT 
    ATAGCGTCGG AGAGTGTGGT GAGTGAGAAG GTGAAGAAGC TGAGTAGTCA 
    TCTTGAGAAA GATGGGTTTA AGATCACCGG AGATTTCGTT CTTGCTAGGT 
    ATAATCCTCC ATGGACGTTA CCACCGTTTA GGACCAATGA GGTCATGATT 
    CCTGTTGAAT GAATTTGATT CAAAGTTTCC TGCTTTTGGT TTCAAAGAAC 
    TTGTTTTTAT TTTGTTTCAC TGTGTTTGTA GTTGTAAGAA GCATAACAAT 
    AATGTATACA AATCTGAGCT TTTGAAGTTA AATACTATAA AATGAATT

    Gene models with high sequence identity

    1. AT2G37970.1 [+] show detail - SOUL heme-binding family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam SOUL haem-binding protein 1.2e-40
    HMMPanther HEME-BINDING PROTEIN-RELATED 4.8e-82
    HMMPanther SOUL haem-binding protein 4.8e-82

    See the detailed result >

    AT2G37970.1

    Model type
    Protein coding
    Short Description
    SOUL heme-binding family protein
    Computational Description
    SOUL-1; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation, red or far-red light signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 1375 Blast hits to 1375 proteins in 156 species: Archae - 18; Bacteria - 186; Metazoa - 71; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR