F19004

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19004

Determination of introduced cDNA(s)

  • RAFL09-42-H22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-42-H22 - Resource: pda08352

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-42-H22 - full reading 
    GATCTCTAAA GCTTTCGTGC TCGCCGATAT AAATCTCTAA TATCGGTCCC 
    GTAAGATCGA ATTAGATTCG CGTCGTTTTT TAAGGAACCA AAATAATGGC 
    GCAACAATCG TTGTTCTACA GTTTCATCGC TCGCGGCACC GTAATCCTCG 
    TCGAGTTCAC AGATTTCAAA GGCAATTTCA CATCTGTCGC TGCTCAGTAC 
    CTTGAGAATC TTCCTTCCTC GAACAACAAG TTTACCTACA ACTGCGATGG 
    TCATACGTTC AACGACCTCG TCGAAAATGG ATTCACCTAT TGTGTTGTTG 
    CAGTTGATTC TGCTGGGAGG GAGATTCCTA TGGCTTTCTT GGAACGCGTG 
    AAGGAGGATT TTTATAAGAG ATATGGTGGT GAAAAGGCTG CAACTGATCA 
    AGCAAATAGC TTGAATAAAG AATTTGGGTC GAATCTGAAA GAGCACATGC 
    AGTATTGCAT GGATCATCCT GATGAGATTA GCAACCTTGC TAAAGCTAAA 
    GCTCAAGTGT CTGAAGTTAA AAGTTTAATG ATGGAAAACA TTGAGAAGGT 
    TCTTGCCCGT GGTGTGATAT GTGAGATGCT GGGTAGTTCA GAGTCACAGC 
    CGCAAGCTTT CTATATAAAA AGAACTCAAA TGAAAAGGAA GAAGTGGTTT 
    CAGAACATGA AGATAAAACT CATTGTCCTT GCAATTATCA TTGCCTTGAT 
    TCTCATCATC ATCCTCTCGG TTTGTGGGGG ATTCAACTGC GGTAAATAAG 
    TCTGGAACAT TTCTTCCCGG CGTTATCGAC TGCGCTCTGT GCTTCCCAAG 
    ATCTCTGAGA ATATCTTCAT TCAGTTCGTT GTGCTGCTTT CTTTTTGTGG 
    TTTCTAATTT CTAATTTCTG CTATGTCCTT TCTACTTAGG TTGTACATAA 
    ATATTATACA TATATGTATG TCCTTTCTTC TTTGAAATTG GTTTTGTATA 
    GGCCATATAT ATGTATGAAT GTTTTTGCTA TTACTGGTAC TGACACTGAT 
    TCTTGCGAT

    Gene models with high sequence identity

    1. AT2G33110.1 [+] show detail - vesicle-associated membrane protein 723
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Synaptobrevin 0.0000000000021
    FPrintScan Synaptobrevin 0.0000000000021
    superfamily Longin-like 1.4e-27
    HMMPanther VAMP-7 1.2e-103
    HMMPanther SNARE PROTEINS 1.2e-103
    HMMPfam Synaptobrevin 9.1e-20
    Gene3D no description 0.00000000095
    ProfileScan Longin 25.45
    ProfileScan Synaptobrevin 11.987

    See the detailed result >

    AT2G33110.1

    Model type
    Protein coding
    Short Description
    vesicle-associated membrane protein 723
    Curator Summary
    member of VAMP72 Gene Family
    Computational Description
    vesicle-associated membrane protein 723 (VAMP723); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, membrane; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1); Has 1518 Blast hits to 1517 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 713; Fungi - 139; Plants - 452; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR