F19008

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19008

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19008

Determination of introduced cDNA(s)

  • RAFL06-88-F16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-88-F16 - Resource: pda17269

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-88-F16 - full reading
    CCCGGAATTG ATCGACTGGA AAACAGAGAA CCACCGTTTC TACAGTTGGA 
    TATGGCTGGT GGGCAAATAG AGAAGCTAGT CAAATACAAG AGCACTGTCA
    AGGATCCAGG AACTCCTGGA TTTCTCAGAA TTAGAGAAGG GATGTTGCTC
    TTCGTCCCTA ATGATCCCAA ATCAGATTCT AAGCTCAAAG TACTTACTCA
    GAACATCAAA AGTCAAAAAT ATACCAAAGA AGGATCAAAT AAACCTCCTT
    GGCTCAATCT CACCAACAAG CAGGCAAAGA GTCATATCTT TGAGTTTGAA
    AATTATCCCG ACATGCATGC TTGCCGTGAT TTCATCACTA AGGCCCTTGC
    TAAATGTGAA TTGGAGCCTA ATAAATCCGT TGTCTCGACA TCTTCCGAGC
    AACTCAGTAT TAAGGAATTG GAGCTGCGCT TCAAGCTTCT GAGAGAAAAT
    AGTGAGCTGC AGAGATTGCA TAAGCAATTT GTGGAAAGTA AAGTACTGAC
    TGAAGATGAA TTCTGGGCTA CAAGAAAGAA ATTACTTGGT AAAGATTCCA
    TCAGAAAGTC AAAACAGCAG CTCGGGCTTA AGAGCATGAT GGTTTCTGGC
    ATCAAACCAT CTACTGATGG GCGGACTAAT AGAGTGACGT TTAACTTGAC
    ACCTGAGATA ATTTTTCAGA TTTTTGCTGA GAAGCCAGCT GTTCGGCAGG
    CATTCATCAA TTATGTTCCG AGTAAGATGA CAGAAAAAGA CTTCTGGACA
    AAATATTTTA GAGCAGAATA TCTTTACAGC ACCAAAAATA CAGCAGTAGC
    TGCAGCAGAA GCTGCTGAGG ACGAGGAACT CGCTGTCTTT CTGAAGCCTG
    ATGAGATATT GGCTCGGGAA ACTCGTCACA AGATTAGACG GGTTGATCCA
    ACTCTTGACA TGGAGGCTGA CCAGGGAGAC GACTACACTC ATCTTATGGA
    CCACGGGATC CAGCGTGATG GCACCATGGA TGTTGTTGAA CCACAAAATG
    ATCAGTTTAA ACGATCACTT TTGCAAGATC TTAATCGTCA TGCTGCTGTT
    GTATTGGAAG GCAGAAGCAT TGATGTTGAG TCAGAAGATA CAAGGATTGT
    TGCAGAGGCT CTCACACGGG TTAAACAAGT AAGCAAAGCT GATGGTGAAA
    CCACCAAGGA CGCTAATCAG GAGAGATTGG AAAGAATGTC CCGGGTAGCA
    GGAATGGAGG ATCTTCAAGC ACCACAAAAT TTCCCATTGG CGCCGCTTTC
    TATCAAGGAT CCTCGTGATT ACTTTGAATC TCAACAAGGA AACGTCCTCA
    ATGTACCCAG AGGAGCAAAG GGCTTGAAGA GAAATGTCCA TGAAGCTTAT
    GGATTACTAA AGGAATCCAT TTTAGAGATT AGAGCTACAG GATTAAGTGA
    TCCGTTGATT AAGCCTGAAG TTTCTTTCGA GGTTTTCAGT TCGTTAACCC
    GAACCATTGC AACTGCTAAA AATATTAATG GGAAGAACCC ACGAGAGAGC
    TTTCTGGACA GATTACCAAA GTCCACTAAG GATGAAGTTC TACACCATTG
    GACATCAATA CAAGAATTAC TGAAACATTT TTGGTCATCT TATCCGATAA
    CAACCACATA TCTTCATACC AAGGTTGGTA AACTGAAGGA TGCAATGTCC
    AATACATATT CAAAACTTGA GGCAATGAAA GAGTCGGTGC AATCTGATCT
    CCGGCATCAG GTTTCTCTAC TGGTTCGTCC AATGCAACAG GCTCTTGACG
    CTGCGTTCCA TCACTACGAA GTGGATCTGC AGAGAAGAAC AGCTAAGAGC
    GGCGAAAGAC CAAACGGCTA CGTATAGAGG ACAAAAAAAC TAAAACTAAA
    AAGCTTTGCA AGATCTTTGA ATTGTTTCAT CAGCCTTGGT TGGTGTTTTT
    GAAAATCTTC ATTTGTCCCT TTTTGTCCGA CCATTGAGAT ACAAAAATGC
    GTTTATATTG TAGTAATATT TTCTTTTCTT TTTTTTGTTA ATTAGGCGTT
    ATATTGTTAA CTGCGAGAGA CAACAAAGAG ATTTTCTCGA TCTGAACATT
    TTTAAGTTTG CAATGTATTA GTAAATTCTC TAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G55750.1 [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BSD 0.0000000025
    HMMPfam BSD 0.00000000000017
    superfamily PH domain-like 3.7e-20
    HMMSmart BSD 0.00000000025
    HMMSmart BSD 0.0000000000018
    ProfileScan BSD 10.213
    ProfileScan BSD 14.278
    HMMPanther UNCHARACTERIZED 5.4e-298
    HMMPanther Kelch related 5.4e-298

    See the detailed result >

    AT1G55750.1

    Model type
    Protein coding
    Short Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    Computational Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR