F19008

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19008

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19008

Determination of introduced cDNA(s)

  • RAFL06-88-F16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-88-F16 - Resource: pda17269

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-88-F16 - full reading 
    CCCGGAATTG ATCGACTGGA AAACAGAGAA CCACCGTTTC TACAGTTGGA 
    TATGGCTGGT GGGCAAATAG AGAAGCTAGT CAAATACAAG AGCACTGTCA 
    AGGATCCAGG AACTCCTGGA TTTCTCAGAA TTAGAGAAGG GATGTTGCTC 
    TTCGTCCCTA ATGATCCCAA ATCAGATTCT AAGCTCAAAG TACTTACTCA 
    GAACATCAAA AGTCAAAAAT ATACCAAAGA AGGATCAAAT AAACCTCCTT 
    GGCTCAATCT CACCAACAAG CAGGCAAAGA GTCATATCTT TGAGTTTGAA 
    AATTATCCCG ACATGCATGC TTGCCGTGAT TTCATCACTA AGGCCCTTGC 
    TAAATGTGAA TTGGAGCCTA ATAAATCCGT TGTCTCGACA TCTTCCGAGC 
    AACTCAGTAT TAAGGAATTG GAGCTGCGCT TCAAGCTTCT GAGAGAAAAT 
    AGTGAGCTGC AGAGATTGCA TAAGCAATTT GTGGAAAGTA AAGTACTGAC 
    TGAAGATGAA TTCTGGGCTA CAAGAAAGAA ATTACTTGGT AAAGATTCCA 
    TCAGAAAGTC AAAACAGCAG CTCGGGCTTA AGAGCATGAT GGTTTCTGGC 
    ATCAAACCAT CTACTGATGG GCGGACTAAT AGAGTGACGT TTAACTTGAC 
    ACCTGAGATA ATTTTTCAGA TTTTTGCTGA GAAGCCAGCT GTTCGGCAGG 
    CATTCATCAA TTATGTTCCG AGTAAGATGA CAGAAAAAGA CTTCTGGACA 
    AAATATTTTA GAGCAGAATA TCTTTACAGC ACCAAAAATA CAGCAGTAGC 
    TGCAGCAGAA GCTGCTGAGG ACGAGGAACT CGCTGTCTTT CTGAAGCCTG 
    ATGAGATATT GGCTCGGGAA ACTCGTCACA AGATTAGACG GGTTGATCCA 
    ACTCTTGACA TGGAGGCTGA CCAGGGAGAC GACTACACTC ATCTTATGGA 
    CCACGGGATC CAGCGTGATG GCACCATGGA TGTTGTTGAA CCACAAAATG 
    ATCAGTTTAA ACGATCACTT TTGCAAGATC TTAATCGTCA TGCTGCTGTT 
    GTATTGGAAG GCAGAAGCAT TGATGTTGAG TCAGAAGATA CAAGGATTGT 
    TGCAGAGGCT CTCACACGGG TTAAACAAGT AAGCAAAGCT GATGGTGAAA 
    CCACCAAGGA CGCTAATCAG GAGAGATTGG AAAGAATGTC CCGGGTAGCA 
    GGAATGGAGG ATCTTCAAGC ACCACAAAAT TTCCCATTGG CGCCGCTTTC 
    TATCAAGGAT CCTCGTGATT ACTTTGAATC TCAACAAGGA AACGTCCTCA 
    ATGTACCCAG AGGAGCAAAG GGCTTGAAGA GAAATGTCCA TGAAGCTTAT 
    GGATTACTAA AGGAATCCAT TTTAGAGATT AGAGCTACAG GATTAAGTGA 
    TCCGTTGATT AAGCCTGAAG TTTCTTTCGA GGTTTTCAGT TCGTTAACCC 
    GAACCATTGC AACTGCTAAA AATATTAATG GGAAGAACCC ACGAGAGAGC 
    TTTCTGGACA GATTACCAAA GTCCACTAAG GATGAAGTTC TACACCATTG 
    GACATCAATA CAAGAATTAC TGAAACATTT TTGGTCATCT TATCCGATAA 
    CAACCACATA TCTTCATACC AAGGTTGGTA AACTGAAGGA TGCAATGTCC 
    AATACATATT CAAAACTTGA GGCAATGAAA GAGTCGGTGC AATCTGATCT 
    CCGGCATCAG GTTTCTCTAC TGGTTCGTCC AATGCAACAG GCTCTTGACG 
    CTGCGTTCCA TCACTACGAA GTGGATCTGC AGAGAAGAAC AGCTAAGAGC 
    GGCGAAAGAC CAAACGGCTA CGTATAGAGG ACAAAAAAAC TAAAACTAAA 
    AAGCTTTGCA AGATCTTTGA ATTGTTTCAT CAGCCTTGGT TGGTGTTTTT 
    GAAAATCTTC ATTTGTCCCT TTTTGTCCGA CCATTGAGAT ACAAAAATGC 
    GTTTATATTG TAGTAATATT TTCTTTTCTT TTTTTTGTTA ATTAGGCGTT 
    ATATTGTTAA CTGCGAGAGA CAACAAAGAG ATTTTCTCGA TCTGAACATT 
    TTTAAGTTTG CAATGTATTA GTAAATTCTC TAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G55750.1 [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BSD 2.5e-09
    HMMPfam BSD 1.7e-13
    superfamily PH domain-like 3.7e-20
    HMMSmart BSD 2.5e-10
    HMMSmart BSD 1.8e-12
    ProfileScan BSD 10.213
    ProfileScan BSD 14.278
    HMMPanther UNCHARACTERIZED 5.4e-298
    HMMPanther Kelch related 5.4e-298

    See the detailed result >

    AT1G55750.1

    Model type
    Protein coding
    Short Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    Computational Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR