F19013

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19013

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F19013

Determination of introduced cDNA(s)

  • RAFL06-14-A20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-14-A20 - Resource: pdz87589

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-14-A20 - 5 prime EST 
    GAACCATCTC TGAACTCATC TTTCAATCTC TCTTGATTCC AATCCATTCT 
    TCTTCAAGTG CCGGGTTCTC GGGTCGGATC TTCTAAGTCT AGCTAGGGAT 
    AATGGCTACT GTCACTACTC ATGCCTCGGC CTCGATTTTC CGACCTTGTA 
    CTTCAAAGCC AAGATTCCTC ACCGGTTCTT CCGGTAGGTT GAACCGCGAC 
    TTGTCGTTTA CATCGATCGG TTCATCGGCC AAAACGTCGT CGTTCAAGGT 
    TGAAGCTAAG AAAGGAGAAT GGTTGCCCGG TTTGGCATCG CCTGATTATC 
    TCACCGGCAG TCTTGCCGGT GACAATGGGT TTGACCCGTT GGGTCTAGCA 
    GAGGATCCAG AGAACTTGAA ATGGTTCGTC CAGGCAGAGC TGGTCAACGG 
    ACGATGGGCT ATGCTCGGTG TCGCTGGGAT GCTTTTGCCG GAAGTTTTCA 
    CCAAGATCGG AATCATAAAT GTTCCTGAGT GGTACGATGC TGGGAAAGAG 
    CAGTATTTTG CATCGTCGTC GACATTGTTC GTGATCGAGT TCATATTGTT 
    TCATTACGTT GAGATCAGAC GGTGGCAAGA CATCAAGAAC CCAGGAAGTG 
    TGAACCAAGA CCCTATCTTT AAGCAATACA GCTTACCTAA GGGTGAAGTT 
    GGTTACCCTG GNGGAATCTT TAACCCGC

    Gene models with high sequence identity

    1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
      E-value: 0; Score: 99.85

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-14-A20 - 3 prime EST 
    AGTTCCTCTG TACATTGAAG ATTCCAAATT TGTTCATGGA GCTACAACGG 
    TTCAACAATA ATTCAAGCTC AAAAACCAAG AACTCTAAGA TGAAACACAC 
    TCACAGACAG ACATGAAAGT GATGGAAGAT AGATAGGTAT GAGATCATAA 
    GTCTGTCTTC ACTCTTTAGT TGAAGGTTTG GACAATAGTG TTGTGCCATG 
    GGTCAGACAA GTGCTGCAAC AGATTCTCAA ATGGTCCTTT TCCAGTCACA 
    TTGTGTTGAA CCACAAACCC TAAGAATGCC AACATCGCCA ACCTCCCGTT 
    TGCTAGCTCT TTCTCCTTGG CCTCTTGCGT AGGAGCAAAG TTAAGCGGGT 
    TAAAGATTCC ACCAGGGTAA CCAACTTCAC CCTTAGGTAA GCTGTATTGC 
    TTAAAGATAG GGTCTTGGTT CACACTTCCT GGGTTCTTGA TGTCTTGCCA 
    CCGTCTGATC TCAACGTAAT GAAACAATAT GAACTCGATC ACGAACAATG 
    TCGACGACGA TGCAAAATAC TGCTCTTTCC CAGCATCGTA CCACTCAGGA 
    ACATTTATGA TTCCGATCTT GGTGAAAACT TCCGGCAAAA GCATCCCAGC 
    GACACCGAGC ATAGCCCATC GTCCGTTGAC CAGCTCTGCC TGGACGAACC 
    ATTTCAAGTT CTCTGGATCC TCTGCTAGAC CCAACGGGTC AAACCCATTG 
    TCACCG

    Gene models with high sequence identity

    1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
      E-value: 0; Score: 100.00

    AT3G47470.1

    Model type
    Protein coding
    Short Description
    light-harvesting chlorophyll-protein complex I subunit A4
    Curator Summary
    Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
    Computational Description
    light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR