F19033

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19033

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19033

Determination of introduced cDNA(s)

  • RAFL06-71-L14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-71-L14 - Resource: pda03374

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-71-L14 - full reading 
    GAGTGTTTTT ATAAAACCAT TTTTCCATCT TCCTCATCAC CTTCCCAAGA 
    AGAAGAACAC CAAAGAAGAA GAAAGGTTAA TAATGATGGG CAGTGTCGAG 
    CTGAATCTGA GGGAGACTGA GCTGTGTCTT GGTCTTCCCG GTGGAGATAC 
    AGTGGCTCCG GTAACCGGAA ACAAGAGAGG GTTCTCAGAG ACGGTTGATC 
    TGAAGCTAAA TCTGAATAAT GAGCCTGCAA ACAAGGAAGG ATCTACGACT 
    CATGACGTCG TGACTTTTGA TTCCAAGGAG AAGAGTGCTT GTCCTAAAGA 
    TCCAGCCAAA CCTCCGGCCA AGGCACAAGT TGTGGGATGG CCACCGGTGA 
    GATCATACCG GAAGAACGTG ATGGTTTCCT GCCAAAAATC AAGCGGTGGC 
    CCGGAGGCGG CGGCGTTCGT GAAGGTATCA ATGGACGGAG CACCGTACTT 
    GAGGAAAATC GATTTGAGGA TGTATAAAAG CTACGATGAG CTTTCTAATG 
    CTTTGTCCAA CATGTTCAGC TCTTTTACCA TGGGCAAACA TGGAGGAGAA 
    GAAGGAATGA TAGACTTCAT GAATGAGAGG AAATTGATGG ATTTGGTGAA 
    TAGCTGGGAC TATGTTCCCT CTTATGAAGA CAAAGACGGT GATTGGATGC 
    TCGTCGGCGA CGTTCCTTGG CCAATGTTCG TCGATACATG CAAGCGTTTA 
    CGTCTCATGA AAGGATCGGA TGCCATTGGT CTCGCTCCGA GGGCGATGGA 
    GAAGTGCAAG AGCAGAGCTT GAAGTCAAAT TAAAAGGATA AGTGGTATCG 
    ATTATATATT TGATTAACAC ATTGATTGGT GTTAATTGCT CTTTTTTTTC 
    TTACGATGAA ATACATTGTT CAGTTTCTTT TGATTGTCTG TGTTTTGATC 
    TGGATTTGGT ATGTAGATAT AGTTTGTATG CTATTATGTG TAATGAACTT 
    AAGTTAAATA TTTGAGACAT TTGTAATGGA AAATGTGTAA TAATTTGAAC 
    ATCCTAAAAA AAAAAATAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G04250.1 [+] show detail - AUX/IAA transcriptional regulator family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aux/IAA-ARF-dimerisation 29.572
    superfamily CAD & PB1 domains 2.5e-08
    HMMPfam AUX_IAA 1.8e-85

    See the detailed result >

    AT1G04250.1

    Model type
    Protein coding
    Short Description
    AUX/IAA transcriptional regulator family protein
    Curator Summary
    Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
    Computational Description
    AUXIN RESISTANT 3 (AXR3); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1763 Blast hits to 1762 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR