F19042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F19042

Determination of introduced cDNA(s)

  • RAFL05-03-I04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-03-I04 - Resource: pda02429

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-03-I04 - full reading 
    GAGTTTTCTT TATCCCCAAA AAACCCTAAA CTCTTCTTCT CGCCGACTTC 
    TCTACTCCTT TCCAGAAACC AAGTTTCAGG TCATCGGTGA AATTTGTTGT 
    GTTCCCGGCG ACTTCTACTT TTCACCTTTC TTCTCGGCGT CGTCTAATTT 
    CTAGGGTTCC CCTGTATTTC ACCGTCAAGA GCAAATCCAA CATGTCGTCG 
    CTGCGTAATG CTATTCCACG GCCTGCTCAT AAGGAGCGAT CTCAACCGGA 
    AGCGAGGAAG AGGTTTGGCA TCCTCGAGAA GCATAAGGAT TATATTATCC 
    GAGCTAATGC TTATCACAAA AAGCAGGAAA CTTTAAAGAT ACTTAGGCAG 
    AAGGCTGCAT TCAAGAATCC AGATGAATTC AACTTTAAGA TGATTAATAG 
    TAAAACAGTT GATGGACGTC ATAGACCAAA AGATGAGGTA AATAAATACT 
    CTGCGGAAGA GCTTATGATT ATGAAGACTC AAGATATTGG ATATGTGTTC 
    CAAAAATGGC AGAGTGAGAA AAACAAAATT GACAAGCTGA CTGCATCGCT 
    GCAATGTACT GGGGATCAGT CAAGCCGTAG ACATGTTTAC TATGCAGAAG 
    ACAGAGAGGA GGCTAGAGAA CTGGAGGTAC AAGGTAGAAG CAAAAGTGAT 
    ATCTCTACAG TAGAGATTCC GAAAGATATT AAAAAGAAAA TGGATAGGTC 
    CTATAGAGAC CTCGAGGGGC GGAAGAGCAG GGCTAAAGAT TTGGAGAAGT 
    TATACACGGA TATGTCAATG CAGAAGGAGT TACAGAAAAA GGGTCGCAAA 
    CGGAAGCTGC GTGATGACGA GCTGCTCAAT CCAAATGGTA AAGCGGTATA 
    CAAATGGCGC GCCGATAGAA AACGCTGAAG AGAAAAGCTT TCATGGTTGT 
    GTAGCTTGAC ATCATTTTTC TGATCTCTAT TAAAGTTTAT ATAGCAGGCA 
    GTTTTATTAT AGTTTTTTTG ATCTCCAGAA CCTGCAGAAC TTTACATACA 
    ATTTTGGATG GGACAATATC TGTTTACTTT AAGCTCTTTG TTGCGTATCT 
    GGAAAAGTTT TACTAATGTG ATTGACGAAA TATAAAC

    Gene models with high sequence identity

    1. AT3G60360.1 [+] show detail - embryo sac development arrest 14
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Small-subunit processome, Utp11 8.2e-79
    HMMPfam Small-subunit processome, Utp11 1.7e-60
    HMMPIR Small-subunit processome, Utp11 1.9e-129

    See the detailed result >

    AT3G60360.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 14
    Computational Description
    EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR