F19051

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19051

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19051

Determination of introduced cDNA(s)

  • RAFL14-20-M13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-20-M13 - Resource: pda18321

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-20-M13 - full reading 
    GCTTTCACCG GAAATCTCCG ATGAAAGACT TTGTTTCTCT CAAGATCGTT 
    ATATCTTCCA TATTCTTAGA TCTGATGGTC TTACCTTTCT CTGTATGGCC 
    AATGATACCT TTGGAAGGAG GGTTCCATTT TCGTATTTGG AAGAGATTCA 
    TATGAGATTC ATGAAAAACT ATGGCAAAGT GGCTCATAAT GCTCCAGCTT 
    ATGCAATGAA TGATGAATTC TCAAGGGTTT TGCATCAGCA GATGGAGTTC 
    TTCTCTAGTA ATCCTAGTGT TGATACTCTC AATCGTGTTA GAGGAGAAGT 
    CAGTGAGATT CGATCGGTCA TGGTAGAGAA CATTGAGAAG ATAATGGAAA 
    GAGGTGATAG GATTGAGCTT CTTGTTGATA AAACAGCAAC AATGCAAGAT 
    AGCTCGTTTC ACTTCAGGAA GCAATCTAAG CGCCTTCGCC GAGCTCTTTG 
    GATGAAAAAT GCTAAGCTCC TGGTCTTGTT GACATGCTTG ATAGTTTTCT 
    TGCTGTACAT AATAATCGCA TCTTTCTGCG GAGGAATCAC TTTACCATCA 
    TGCAGATCTT AAAATCTGGC GGCCTTATCT AAGGTATACT GAAACGGACC 
    ACTGTTTTTG TAAATCAACT CAGTCGCATC ATTTCGATTT GAAGCCTTGG 
    TTTTGTCATG AAAATGACTG TGAGTTTGAA GTTACATGTC ATGGTCCTCC 
    TTGCTTATGT AACTCTTGTA AATGTCAAAA TCAAAATGAT ACAGAGGTTC 
    ATTGAACTCT TGCCTTGTCT TTTAGATTTA GTCACGTGAG TGAGTTTGTT 
    CTCTGTATTT CCAAAACTTT ATCCGCTGTG TCTTTATAAT TTTTGCATTT 
    GCAATGTACA TCACATATTC GTTATTTTTG TTGTTAAAAT TACTTCAGTT 
    TTCATCTTTG TTTAATAACA TTTCTGATTC ACAAAAAAAA

    Gene models with high sequence identity

    1. AT5G22360.1 [+] show detail - vesicle-associated membrane protein 714
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Synaptobrevin 0.0000000000000789999609889417
    FPrintScan Synaptobrevin 0.0000000000000789999609889417
    FPrintScan Synaptobrevin 0.0000000000000789999609889417
    superfamily Longin-like 3e-21
    ProfileScan Synaptobrevin 0
    ProfileScan Longin 0
    Gene3D G3DSA:1.20.5.110 1.79999754022378e-21
    HMMPanther PTHR21136 1.09999184471398e-86
    PatternScan Synaptobrevin 0
    HMMPfam Synaptobrevin 1.99999999999999e-28
    HMMPanther PTHR21136:SF8 1.09999184471398e-86

    See the detailed result >

    AT5G22360.1

    Model type
    Protein coding
    Short Description
    vesicle-associated membrane protein 714
    Curator Summary
    Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
    Computational Description
    vesicle-associated membrane protein 714 (VAMP714); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2317 Blast hits to 2315 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 867; Fungi - 487; Plants - 553; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR