F19102

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19102

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep brown
Seed::deep red

Original: F19102

Determination of introduced cDNA(s)

RAFL07-18-J03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-J03 - Resource: pda04445

full reading [+] show sequence

GATCAAATCT TTTCAGATTC AACCCAAAAT TGAAGACAAA AATGTCTCGC 
AGATCGCTAA CTCTCCTCAA GAATCTAGCT AGAAACGCGA ATGGATCAGG 
TATTCAAACC CGATCCGTGA CTTACATGCC CAGACCCGGT GACGGAGCAC 
CACGCGCAGT GACGCTGATC CCCGGAGATG GAATCGGTCC TCTGGTGACG 
AACGCCGTGG AACAGGTGAT GGAAGCGATG CACGCTCCGA TCTTCTTCGA 
GAAGTACGAT GTTCACGGAG AAATGAGCCG TGTGCCGCCG GAAGTGATGG 
AGTCGATAAG GAAGAATAAG GTTTGTTTGA AAGGTGGGCT TAAGACTCCT 
GTTGGTGGTG GTGTTAGTTC TCTTAACGTC CAGCTTAGGA AAGAGCTTGA 
CCTCTTTGCT TCTCTGGTCA ACTGTTTTAA TTTGCCTGGT TTACCTACTC 
GCCATGAGAA TGTTGACATC GTTGTCATCA GAGAGAACAC TGAAGGTGAG 
TACGCGGGGC TTGAGCACGA GGTTGTTCCT GGTGTCGTTG AGAGTCTGAA 
GGTGATCACG AAGTTCTGTT CGGAGCGTAT TGCAAAGTAT GCTTTTGAGT 
ATGCCTACCT GAACAACAGG AAGAAAGTTA CAGCGGTGCA TAAGGCTAAC 
ATCATGAAAC TTGCGGATGG TTTGTTCTTG GAATCTTGTC GCGAGGTTGC 
GAAAAAGTAT CCCAGCATCA CCTACAATGA AATCATTGTT GATAACTGCT 
GTATGCAACT TGTAGCCAAA CCAGAGCAAT TCGATGTCAT GGTAACGCCG 
AATCTCTATG GGAATTTAGT TGCAAACACT GCTGCTGGTA TTGCTGGAGG 
CACAGGAGTC ATGCCTGGAG GAAATGTTGG GGCTGACCAT GCGGTATTCG 
AGCAAGGTGC ATCAGCAGGA AATGTTGGGA AAGACAAGAT AGTATTGGAA 
AACAAAGCAA ACCCAGTGGC ATTGCTTCTC TCATCAGCGA TGATGCTTAG 
ACACCTTCAG TTTCCTTCAT TTGCTGACCG GCTCGAAACA GCAGTGAAGA 
AAGTCATCGC TGAAGGAAAG TGCCGGACGA AAGATCTTGG TGGAACAAGC 
ACGACTCAAG AGGTCGTTGA TGCGGTCATT GCAAAACTAG ACTGACTTTG 
ACAAATTACG TGTTCCCGCT CTGCATAAAT CATCAAATTC CTGATACAGA 
TTTTGTGTTG CCAAAATATG GGGTATGATC CAAGCACAAC GGTTATCTGG 
TTTTGTACCT CGAGTTTTAT TATATTCTTT AGCCGTGGAA TATTTCGATA 
AGAAAAAAAA ACATGTTCCA AATAATTCAT GTTGCTACGT TTGTTGGCGC 
CTTTTGTCAT GTCAAAGTTT CTTAAACACT TGTTCGTGGA ATATGCAAAC 
TTTTATGG

Gene models with high sequence identity

AT4G35260.1 [+] show detail - isocitrate dehydrogenase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Isocitrate/isopropylmalate dehydrogenase	4.4e-81
superfamily	Isocitrate/Isopropylmalate dehydrogenase-like	3e-112
Coil	coiled-coil	0
Gene3D	Isocitrate/isopropylmalate dehydrogenase	2.8e-112
HMMTigr	Isocitrate dehydrogenase NAD-dependent, mitochondrial	1.7e-246
HMMPanther	ISOCITRATE DEHYDROGENASE [NAD]	1e-194
HMMPanther	Isocitrate/isopropylmalate dehydrogenase	1e-194

See the detailed result >

AT4G35260.1

Model type: Protein coding
Short Description: isocitrate dehydrogenase 1
Curator Summary: Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
Computational Description: isocitrate dehydrogenase 1 (IDH1); CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase subunit 2 (TAIR:AT2G17130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR