F19104

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19104

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19104

Determination of introduced cDNA(s)

  • RAFL09-07-K22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-K22 - Resource: pda05191

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-K22 - full reading 
    CCTCATTCTT CCAATCGCAC TTCCTTTACC AGATCAGACG TCAATTTCAA 
    CTCTTCAGTG AAGAGATTTC TTTCACCGAA TTTTCTACTC CGATCGATCA 
    ATTGAAGATT GAAATGGAAG CTAATTCAGG CGGAGGAGGA GGAGCTGAAG 
    GCGGAAGAGC GGTAACCGGA GGAGGAGGAG GAGGAGGAGG GAGCGATGTG 
    GAATTGGTGA GCAAGACGTT GCAAGTGGAG CATAAGCTAT TCTATTTTGA 
    TCTTAAGGAG AATCCTCGTG GAAGGTATCT AAAGATATCG GAGAAGACGT 
    CGGCGACGAG GTCAACCATC ATTGTTCCTT CCTCCGGCAT CTCTTGGTTC 
    CTTGATCTCT TCAACTACTA TGTCAATTCT GAGGAACACG AGCTTTTTAG 
    CAAAGAATTG CAGCTTGATT CCAAGGTGTT TTACTTCGAT ATCGGTGAGA 
    ACAGAAGAGG ACGCTTCTTG AAGGTGTCAG AAGCATCGGT TAGTAGAAAT 
    CGAAGTACCA TTATTGTTCC AGCTGGAAGC TCTCCTGATG AAGGATGGGC 
    AGCTTTCAGG AATATATTGG CTGAGATACA TGAAGCATCA GGACTTTTTG 
    TGATGCCAAA TCAGAAACCT TCTGATGGAC AGGAACACTT GGTTGATGAT 
    GTTGGAGCTG GTTTTATACC TGGACATGGT AGTCAGCAGC CATCTTCTTC 
    AGAACATAAT GTGGATCGAA CAATTGACTC GCCAGGCCAG GAAGAAACCG 
    GAATGACTGG TGTTTCTAAA GTAATCAGAG CTGACCAGAA ACGGTTCTTC 
    TTTGATCTTG GGAACAATAA CAGGGGCCAT TTCTTAAGGA TATCTGAGGT 
    GGCAGGTTCT GACAGGTCTT CCATCATTCT ACCGTTATCG GGTCTTAAGC 
    AGTTTCACGA AGTAATTGGT CACTTTGTGG AGATCACCAA AGATAAAATT 
    GAAGGTATGA CAGGTGCAAA TGTCAGGACA GTTGATCCTC CTCAGAGATA 
    AGTATTGATT CTCTTAGAGG ATGGAAATTT TCAATCCTCT AACCATTTGA 
    ATCTGGCAAC TTCAAGTCGA CTGCCTGATC GCGGTGTGCA ATAGTTTCAC 
    GTAATATCTC TCGCCCCTTC ACATCTTCTA AAAATAATTC AGCAGGATCA 
    TCATTTGCCT TAATAGTAGA TAAAACAAAC TTTGGAGTCT GCAACTGGGA 
    ATAAGCTGAA AATCATCCAC CATGTGTATC TCTCTCTCTC TCTCTCTCTC 
    TCCCTCCCTC CCTCATTTGC TTCTGTTCTG TTTTAACTTT TTTTGTTTTT 
    GTTCAGTTTG GGTCATTGGG TGTATATCTG TTGACGGCTT GATGCATTTC 
    AATTGTAAAA GAATATTGGG GTTTATATGT TTGGGCTAAT GCCTGTTGGA 
    ATAAAAGATG AAGTGTAAGT TCC

    Gene models with high sequence identity

    1. AT2G32080.2 [+] show detail - purin-rich alpha 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PUR-alpha/beta/gamma, DNA/RNA-binding 3.4e-111
    HMMSmart PUR-alpha/beta/gamma, DNA/RNA-binding 4e-28
    HMMSmart PUR-alpha/beta/gamma, DNA/RNA-binding 2.2e-29
    HMMSmart PUR-alpha/beta/gamma, DNA/RNA-binding 5.2e-27
    HMMPfam PUR-alpha/beta/gamma, DNA/RNA-binding 1e-22
    HMMPfam PUR-alpha/beta/gamma, DNA/RNA-binding 4.2e-12

    See the detailed result >

    AT2G32080.2

    Model type
    Protein coding
    Short Description
    purin-rich alpha 1
    Curator Summary
    similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication
    Computational Description
    purin-rich alpha 1 (PUR ALPHA-1); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUR-alpha/beta/gamma, DNA/RNA-binding (InterPro:IPR006628); Has 588 Blast hits to 332 proteins in 74 species: Archae - 0; Bacteria - 31; Metazoa - 438; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR