F19119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19119

Determination of introduced cDNA(s)

  • RAFL03-01-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-01-D10 - Resource: pda02271

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-01-D10 - full reading 
    ACCTCATTCA TATCTCTCTC AACCTGAACA TTTTCATTTT TTCTAAATCA 
    AGAACTTCAA ATCTTGAAAC TTTCTAAAAA GATGGAGCTT ATTCCTGATC 
    TTCCCGAAAC TGTAGCCTAC GAGTGTCTCC TACGCTCCTC CTACAAGCAA 
    TTCCCTCTTA TGGCCTCTGT TTGCAAACTC TGGCAGCGAG AAATCAGCCT 
    CTCTGATTTT TTCCGACACC GGAAAGCTTC AGGACATAGT CAAGAGCTTG 
    TTGTCTTGTC TCAAGCTCGG GTCGACCCGG TTAAAGAACT CGTATCGGGT 
    AATAAAACCA TCCCCACCCC CGTGTACCGA ATCTCGGTTC TTGAACTTGG 
    TACCGGTCTA AGGAGCGAGC TGCCTCCGGT TCCAGGTCAT TCCAACGGGT 
    TGCCTCTGTT CTGCAGATTA GTCTCTGTCG GGTCGGATCT TGTTGTATTG 
    TGCGGGCTTG ACCCGGTTAC ATGGCGTACC TCTGATTCGG TCTTCGTTTT 
    CAGCTTCTTG ACCTCCACGT GGCGCGTCGG GAAGAGCATG CCAGGTGGAC 
    CGCGTTCCTT CTTTGCCTGC GCTTCGGATT CTCAACGGAA CGTCTTTGTG 
    GCTGGAGGAC ACGACGAAGA CAAGAACGCG ATGATGTCAG CTCTGGTGTA 
    TGACGTGGCA GAAGACAGAT GGGCTTTCTT GCCGGATATG GGCCGTGAGC 
    GAGACGAATG CACAGCTATT TTCCACGCTG GCAAATTCCA TGTCATCGGT 
    GGTTACTCCA CGGAGGAACA AGGGCAATTT AGTAAAACTG CTGAATCGTT 
    CGACGTCACC ACATGGCGGT GGAGTCCACA AGGAGAAGAG TTTCTCTCTT 
    CGGAGATGAC TATGTGGCCT CCGATTTGTG CTGCCGGTGA AAACGGAGAT 
    TTATATGCTT GTTGTCGCCG TGATCTGATG ATGATGAAAG ATGACACGTG 
    GTATAAAGTT GGGAATCTAC CTGCTGACGT GTGCAATGTA TCTTACGTGG 
    CGATAAGGAG GTCTGGAAAC CTGGTTGTGA TCGGTTCGGC TCGGTACGGC 
    GAACCAAGTG TAGGGTATAA TTGGGATATG AGCAATTCTC GATGGTTAAA 
    ACTGGAAACA CATGATAAAT ATGAAGGCCA CGTTCAAGCT GGTTGCTTCT 
    TGGAGATATA AAAAAACTTT AGAAAAGGTT CCGAATCTTT TGTACGTCGT 
    CCTTGCGAAA TGACGGTAAA TTTGGTCGGT TGATTTTGTC AAGTGTGACT 
    GTATAAATAT TATATTGTTA TAGATAAATT TGTTAGCTTG AATGTAAAAA 
    AATTATTGTC GAGCG

    Gene models with high sequence identity

    1. AT1G15670.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Kelch repeat type 1 0.63
    HMMSmart Kelch repeat type 1 0.0078
    HMMPanther KELCH-RELATED 0.0000000002
    HMMPanther Kelch related 0.0000000002
    Gene3D Kelch-type beta propeller 8.9e-32
    superfamily Galactose oxidase/kelch, beta-propeller 1.2e-42

    See the detailed result >

    AT1G15670.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G80440.1); Has 1241 Blast hits to 1194 proteins in 125 species: Archae - 6; Bacteria - 99; Metazoa - 399; Fungi - 6; Plants - 685; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR