F19119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19119

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	whole plant flowering stage (PO:0007016)	premature (PATO:0000694) (Adult plant::Flowering::early)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19119

Determination of introduced cDNA(s)

RAFL03-01-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-01-D10 - Resource: pda02271

full reading [+] show sequence

ACCTCATTCA TATCTCTCTC AACCTGAACA TTTTCATTTT TTCTAAATCA 
AGAACTTCAA ATCTTGAAAC TTTCTAAAAA GATGGAGCTT ATTCCTGATC 
TTCCCGAAAC TGTAGCCTAC GAGTGTCTCC TACGCTCCTC CTACAAGCAA 
TTCCCTCTTA TGGCCTCTGT TTGCAAACTC TGGCAGCGAG AAATCAGCCT 
CTCTGATTTT TTCCGACACC GGAAAGCTTC AGGACATAGT CAAGAGCTTG 
TTGTCTTGTC TCAAGCTCGG GTCGACCCGG TTAAAGAACT CGTATCGGGT 
AATAAAACCA TCCCCACCCC CGTGTACCGA ATCTCGGTTC TTGAACTTGG 
TACCGGTCTA AGGAGCGAGC TGCCTCCGGT TCCAGGTCAT TCCAACGGGT 
TGCCTCTGTT CTGCAGATTA GTCTCTGTCG GGTCGGATCT TGTTGTATTG 
TGCGGGCTTG ACCCGGTTAC ATGGCGTACC TCTGATTCGG TCTTCGTTTT 
CAGCTTCTTG ACCTCCACGT GGCGCGTCGG GAAGAGCATG CCAGGTGGAC 
CGCGTTCCTT CTTTGCCTGC GCTTCGGATT CTCAACGGAA CGTCTTTGTG 
GCTGGAGGAC ACGACGAAGA CAAGAACGCG ATGATGTCAG CTCTGGTGTA 
TGACGTGGCA GAAGACAGAT GGGCTTTCTT GCCGGATATG GGCCGTGAGC 
GAGACGAATG CACAGCTATT TTCCACGCTG GCAAATTCCA TGTCATCGGT 
GGTTACTCCA CGGAGGAACA AGGGCAATTT AGTAAAACTG CTGAATCGTT 
CGACGTCACC ACATGGCGGT GGAGTCCACA AGGAGAAGAG TTTCTCTCTT 
CGGAGATGAC TATGTGGCCT CCGATTTGTG CTGCCGGTGA AAACGGAGAT 
TTATATGCTT GTTGTCGCCG TGATCTGATG ATGATGAAAG ATGACACGTG 
GTATAAAGTT GGGAATCTAC CTGCTGACGT GTGCAATGTA TCTTACGTGG 
CGATAAGGAG GTCTGGAAAC CTGGTTGTGA TCGGTTCGGC TCGGTACGGC 
GAACCAAGTG TAGGGTATAA TTGGGATATG AGCAATTCTC GATGGTTAAA 
ACTGGAAACA CATGATAAAT ATGAAGGCCA CGTTCAAGCT GGTTGCTTCT 
TGGAGATATA AAAAAACTTT AGAAAAGGTT CCGAATCTTT TGTACGTCGT 
CCTTGCGAAA TGACGGTAAA TTTGGTCGGT TGATTTTGTC AAGTGTGACT 
GTATAAATAT TATATTGTTA TAGATAAATT TGTTAGCTTG AATGTAAAAA 
AATTATTGTC GAGCG

Gene models with high sequence identity

AT1G15670.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Kelch repeat type 1	0.63
HMMSmart	Kelch repeat type 1	0.0078
HMMPanther	KELCH-RELATED	2e-10
HMMPanther	Kelch related	2e-10
Gene3D	Kelch-type beta propeller	8.9e-32
superfamily	Galactose oxidase/kelch, beta-propeller	1.2e-42

See the detailed result >

AT1G15670.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G80440.1); Has 1241 Blast hits to 1194 proteins in 125 species: Archae - 6; Bacteria - 99; Metazoa - 399; Fungi - 6; Plants - 685; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).
Link: InterPro Scan - TAIR