F19127

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19127

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19127

Determination of introduced cDNA(s)

  • RAFL07-18-E24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-E24 - Resource: pda04432

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-18-E24 - full reading 
    AAGAAGCAAT GGAGTCAACT GATCGTTCAA GTCAAGCAAA AGCTTTCGAC 
    GAGGCCAAAA TCGGTGTGAA AGGGCTTGTG GATTCAGGAA TCACAGAGAT 
    TCCGGCCCTG TTCCGTGCAA CGCCGGCTAC TCTTGCAAGC CTGAAGTCGC 
    CACCACCTCC AAAGCATCTC ACCATCCCTA CCGTTGATCT CAAAGGAGCA 
    AGCGTGGTGG AGAAGATCGG AGAAGCTGCT GAGAAATGGG GATTATTCCA 
    TTTGGTGAAT CACGGCATCC CGGTGGAGGT TCTGGAGAGG ATGATTCAAG 
    GGATTCGCGG GTTTCACGAG CAAGAACCTG AAGCCAAGAA ACGCTTCTAC 
    TCTAGGGATC ACACTAGAGA CGTGCTTTAC TTTAGCAATC ATGATCTCCA 
    AAACTCCGAG GCCGCCAGTT GGAGAGACAC TCTCGGTTGT TATACCGCAC 
    CCGAGCCTCC CAGATTAGAG GATTTGCCCG CGGTTTGCGG GGAGATTATG 
    CTGGAGTACT CAAAGGAAAT AATGAGTTTA GGTGAAAGGC TATTTGAGCT 
    TCTATCAGAG GCTTTGGGGT TGAACTCTCA TCATCTCAAG GACATGGACT 
    GTGCCAAGTC TCAATATATG GTTGGCCAAC ACTACCCACC TTGCCCTCAG 
    CCTGACCTTA CTATAGGCAT AAACAAGCAC ACCGATATTT CCTTTCTCAC 
    CGTTCTTCTT CAAGACAATG TTGGAGGGCT TCAAGTTTTC CATGAACAGT 
    ATTGGATTGA TGTTACTCCT GTCCCTGGGG CTCTAGTCAT TAACATTGGA 
    GATTTTCTTC AGCTTATAAC CAATGATAAG TTCATAAGCG CGGAGCATAG 
    GGTGATAGCC AATGGATCTT CTGAACCGCG GACTTCCGTG GCAATTGTTT 
    TCAGCACGTT CATGAGGGCG TATTCTCGAG TATATGGGCC AATCAAAGAT 
    CTCCTGTCTG CAGAAAACCC TGCTAAGTAT AGAGACTGCA CCCTCACCGA 
    ATTTTCAACC ATCTTCAGCT CAAAAACGCT CGATGCTCCT AAGTTACACC 
    ATTTCAAAAT CTAAGACATT TGGGTTTAGA CCTTTTTTGT CTACTAATCT 
    ATCAAACTCT CTCGGTACAC AATGAAAACT GGTACTTCAT ATGTAAGCCA 
    TGATATAATA CGATAGTGTA CATTTCGAAG CTTATTGGCC TCGCATTCAT 
    CCTCATCCAC TC

    Gene models with high sequence identity

    1. AT1G03400.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 3.9e-175
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.9e-175
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.1e-22
    superfamily Clavaminate synthase-like 2.3e-87
    Gene3D no description 1.1e-88

    See the detailed result >

    AT1G03400.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Curator Summary
    A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1); Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0; Bacteria - 1123; Metazoa - 116; Fungi - 839; Plants - 4847; Viruses - 0; Other Eukaryotes - 1261 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR