F19140

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19140

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19140

Determination of introduced cDNA(s)

RAFL06-10-M04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-M04 - Resource: pda09383

full reading [+] show sequence

GAGATAAACT TGACGCGTCC CTTCTTCATT CTCCGTCTTC TTCACGTCAC 
CGGAAAAACG ACGAATCTCA TTGCCTGAGA TTCTTCATCG GAATTAAACC 
TCCGGAGGAA TTAATCACGT CTCACATTTT TTCACCATGT CGAGTTTGGA 
GGAGCCGCTA AGCTTTGACA AGTTGCCAAG TATGAGCACT ATGGATAGGA 
TTCAGAGATT TTCTTCCGGT GCTTGTCGCC CCAGGGATGA TGTCGGTATG 
GGACACCGTT GGATTGAAGG AAGAGATTGC ACTACCTCTA ACAGTTGCAT 
TGATGATGAT AAAAGCTTTG CTAAAGAGTC ATTCCCGTGG AGAAGGCATA 
CTCGGAAATT ATCTGAAGGA GAGCATATGT TTAGGAATAT TTCGTTTGCT 
GGAAGGACTT CTACTGTTTC TGGGACTTTA AGGGAATCCA AAAGTTTTAA 
GGAGCAGAAG TATAGCACAT TTAGCAATGA GAATGGCACG TCGCATATAA 
GTAATAAGAT CTCTAAAGGT ATACCAAAGT TTGTGAAGAT TGTAGAAGTT 
GGTCCAAGAG ATGGCCTGCA GAATGAGAAA AATATAGTAC CCACATCTGT 
AAAGGTGGAA CTAATTCAGA GATTAGTTTC TTCTGGATTG CCTGTTGTCG 
AGGCTACAAG TTTTGTATCA CCAAAGTGGG TTCCCCAGCT TGCAGATGCA 
AAGGATGTAA TGGATGCAGT AAATACTTTA GATGGGGCTC GATTACCGGT 
TCTGACACCG AATCTAAAAG GCTTTCAAGC GGCTGTATCT GCAGGTGCAA 
AGGAAGTTGC AATCTTTGCA TCGGCTTCTG AGTCATTCTC CTTGTCAAAT 
ATTAACTGTA CCATCGAAGA GAGTCTCTTG AGATATCGTG TTGTTGCCAC 
TGCTGCAAAG GAGCATTCGG TTCCAGTCCG TGGGTATGTA TCTTGCGTTG 
TGGGGTGTCC AGTAGAGGGA CCTGTTCTAC CCTCAAAAGT GGCTTATGTT 
GTGAAAGAAC TCTATGACAT GGGCTGCTTT GAGATTTCTC TGGGTGATAC 
AATTGGAATC GGCACTCCTG GTTCTGTGGT TCCAATGCTT GAAGCCGTGA 
TGGCAGTTGT GCCAGCGGAC AAGCTGGCTG TTCACTTCCA TGATACCTAT 
GGGCAAGCTC TTGCAAACAT ATTGGTGTCT CTCCAGATGG GAATAAGCAT 
AGTAGACTCA TCAATTGCCG GATTAGGCGG CTGCCCATAT GCAAAAGGAG 
CTTCAGGAAA TGTAGCCACA GAAGATGTGG TTTACATGTT GAACGGTTTA 
GGCGTCCACA CCAATGTCGA CTTGGGAAAG CTTATAGCTG CTGGAGATTT 
CATCAGCAAG CATCTCGGTC GTCCCAATGG TTCGAAGGCT GCCGTTGCCC 
TCAACCGTCG TATCACAGCT GATGCCTCCA AGATATGAGT TTTATTAGAC 
CATCTCCAAT GTATAGCTCT ATATCTTACT CGAAAATAGA GTTACTCTCT 
ACAATTTATC CCTCTATTTT CTACTCTAAA AAGAATATTC TTAAAAAATA 
TTCTATTTCT ATTTTATATA CTAATACATT TTATTTATCT

Gene models with high sequence identity

AT2G26800.1 [+] show detail - Aldolase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Pyruvate carboxyltransferase	4.4e-53
Gene3D	Aldolase-type TIM barrel	6.3e-64
HMMPanther	HYDROXYMETHYLGLUTARYL-COA LYASE	1.1e-112
HMMPanther	ISOPROPYLMALATE SYNTHASE RELATED	1.1e-112
ProfileScan	Pyruvate carboxyltransferase	35.261
superfamily	Aldolase	9.2e-78

See the detailed result >

AT2G26800.1

Model type: Protein coding
Short Description: Aldolase superfamily protein
Computational Description: Aldolase superfamily protein; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 10820 Blast hits to 10806 proteins in 2215 species: Archae - 426; Bacteria - 7058; Metazoa - 235; Fungi - 307; Plants - 196; Viruses - 0; Other Eukaryotes - 2598 (source: NCBI BLink).
Link: InterPro Scan - TAIR