F19206

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19206

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19206

Determination of introduced cDNA(s)

  • RAFL04-09-D07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-D07 - Resource: pda02284

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-D07 - full reading 
    AAGCTTTTTT TACAAAAGAC GTACACGTCT CTCTCTCTCA CTCCCTCTTT 
    AAGATCAGAA GCTCATTTCT TCGATACGAT CAACCATTAG AGATGGGTTC 
    GGCGAACAAC GAGTACGAGT TTCTGAGTGA GATTGGGCTG ACTTCTCACA 
    ACTTGGGATC TTACGTTGCT GGCAAATGGC AAGCCAACGG ACCTCTTGTT 
    TCAACTCTCA ATCCTGCTAA CAATCAGCCA ATTGCTCAAG TTGTGGAAGC 
    TTCTCTAGAG GATTACGAGC AAGGTTTGAA AGCTTGCGAG GAAGCAGCTA 
    AAATATGGAT GCAGGTTACG GCTCCTAAGA GAGGTGATAT CGTCAGACAG 
    ATTGGGGATG CACTAAGATC CAAACTTGAC TATCTTGGTC GTCTTCTTTC 
    TCTTGAAATG GGAAAGATCC TTGCTGAAGG TATTGGAGAA GTTCAGGAAG 
    TAATTGACAT GTGTGATTTT GCTGTTGGTT TGAGCCGACA ACTCAATGGA 
    TCGGTTATAC CTTCAGAACG CCCTAACCAC ATGATGTTGG AGATGTGGAA 
    TCCTCTTGGC ATTGTTGGTG TTATCACAGC GTTTAATTTT CCCTGTGCAG 
    TTCTTGGTTG GAATGCTTGT ATTGCTCTTG TCTGTGGAAA CTGTGTAGTC 
    TGGAAAGGTG CTCCAACTAC ACCGTTAATA ACTATCGCAA TGACCAAGCT 
    AGTAGCTGAA GTTTTAGAGA AAAACAACTT ACCCGGTGCC ATTTTTACGG 
    CCATGTGTGG TGGTGCTGAA ATTGGTGAAG CAATAGCCAA AGACACACGC 
    ATTCCCTTAG TATCCTTTAC TGGAAGCTCC AGGGTGGGCT CAATGGTACA 
    ACAAACAGTG AATGCGAGAT CTGGGAAAAC TTTGCTTGAG TTGAGTGGAA 
    ACAATGCAAT CATAGTCATG GACGATGCTG ATATACAGTT AGCGGCTCGA 
    TCTGTTCTAT TCGCTGCGGT TGGAACTGCT GGTCAACGTT GCACAACTTG 
    CCGTAGGCTG CTTTTGCATG AGAGTGTCTA TGACAAAGTA CTCGAGCAAC 
    TGCTTACCTC ATACAAACAA GTCAAAATCG GCAATCCTCT TGAGAAAGGG 
    ACATTGTTAG GACCATTACA TACTCCTGAA TCAAAAAAGA ACTTTGAGAA 
    AGGAATTGAA GTCATCAAAT CCCAGGGTGG TAAAATACTA ACGGGAGGTA 
    AAGCAGTCGA AGGTGAAGGA AACTTTGTGG AGCCTACGAT AATCGAGATA 
    TCAGCAGATG CTGCTGTCGT CAAAGAAGAG CTATTTGCTC CGGTTCTATA 
    TGTTCTAAAG TTTAAGTCAT TTGGAGAGGC TGTTGCGATA AACAACTCGG 
    TTCCTCAAGG TCTAAGCAGC TCGATATTCA CTCGGAACCC TGAAAACATC 
    TTCAGGTGGA TCGGACCACT GGGAAGTGAC TGTGGCATTG TGAATGTGAA 
    CATACCGACG AATGGAGCTG AGATTGGTGG AGCTTTTGGA GGCGAGAAAG 
    CGACTGGTGG TGGTCGTGAA GCTGGAAGCG ACTCATGGAA ACAGTACATG 
    CGTCGATCGA CTTGTACCAT CAACTATGGA AACGAGTTAC CTCTAGCGCA 
    AGGAATTAAC TTCGGTTAGA TTTTTCAGAG ATTTACTCGT TAATTAATAA 
    TGTTATGTTG GTTCGATTTC GATACTTGTA TTGTATGCCT TGTTCTCTCC 
    AAGCCTTTGA CTTAAGATGA TTACGCTTTT AATATATATA AAAAAATATT 
    GAATAG

    Gene models with high sequence identity

    1. AT1G54100.1 [+] show detail - aldehyde dehydrogenase 7B4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Aldehyde/histidinol dehydrogenase 2.7e-141
    PatternScan Aldehyde dehydrogenase, conserved site 0
    Gene3D Aldehyde dehydrogenase, N-terminal 5.6e-79
    HMMPfam Aldehyde dehydrogenase 2.1e-129
    HMMPanther ALDEHYDE DEHYDROGENASE 7 0
    HMMPanther Aldehyde dehydrogenase 0

    See the detailed result >

    AT1G54100.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 7B4
    Curator Summary
    Aldehyde dehydrogenase
    Computational Description
    aldehyde dehydrogenase 7B4 (ALDH7B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 5F1 (TAIR:AT1G79440.1); Has 58805 Blast hits to 58641 proteins in 2995 species: Archae - 475; Bacteria - 35443; Metazoa - 2491; Fungi - 2112; Plants - 1217; Viruses - 0; Other Eukaryotes - 17067 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR