F19215

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19215

Determination of introduced cDNA(s)

  • RAFL05-07-G16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-G16 - Resource: pda01133

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-G16 - full reading 
    AAACAAAAAC TCGTGGAGGA GATATGCAAT TGCTGACGCT AAATCCGGCG 
    GCCATTTCCA GGACGCCGCC GCAAGCCATA GACCCTTCCT CATCCTCGAG 
    TCTTCTTCTT CCTTTTCCTC AGATTTTGAG CTCCCAACGC GCTCTTGGTC 
    TTGTAGCTAG GCCTTGTAAT CCACTTCGAC GAGGATTATC TAGGTTTTTA 
    TCAAGTCGAC AGCTTTTCCG ACGATCCAAA GTTGTCAAGG CAGTAGCAAC 
    CCCAGACCCC ATCTTGGAAG TACCTTTAAC TGAGGAAAAT GTAGAAAGCG 
    TTTTGGATGA AATCCGACCT TACCTTATGT CTGATGGTGG TAATGTGGCA 
    TTACATGAGA TCGATGGAAA TATTGTGCGG GTTAAGCTGC AGGGAGCATG 
    CGGATCATGT CCAAGTTCTA CTATGACAAT GAAGATGGGT ATTGAGCGTC 
    GTCTAATGGA AAAGATCCCT GAAATAGTGG CTGTAGAAGC TCTTCCAGAT 
    GAAGAGACTG GCCTTGAACT GAATGAGGAA AACATTGAAA AGGTGCTGGA 
    AGAAATCAGG CCTTACTTAA TCGGAACAGC AGATGGATCG CTTGATCTAG 
    TGGAGATTGA AGATCCAATC GTGAAGATAA GAATCACAGG ACCTGCAGCT 
    GGAGTCATGA CAGTTCGTGT AGCAGTCACT CAGAAACTAA GAGAGAAAAT 
    TCCATCAATC GCAGCTGTTC AACTTATATA GAAACAACAA CTCTTCTTGT 
    ATGCTTTGTA TTAGCTCCCT TGTATAGTTG TTGTGCATAG ATTATGTGTT 
    TTGTTGACAT TTGCTATTTG TCCTCAAATA AGTTTTCAAC ATTTTTGTTT 
    TACTTAGAAA AAAAGTCCTT ATTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G49940.1 [+] show detail - NIFU-like protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 5e-30
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 6e-20
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 3.3e-27
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 4.9e-07
    HMMPanther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELA 1.2e-62

    See the detailed result >

    AT5G49940.1

    Model type
    Protein coding
    Short Description
    NIFU-like protein 2
    Curator Summary
    Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
    Computational Description
    NIFU-like protein 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: chloroplast organization, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU domain protein 3 (TAIR:AT4G25910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR