F19223

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19223

Determination of introduced cDNA(s)

  • RAFL06-11-F24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-F24 - Resource: pda07538

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-11-F24 - full reading 
    ATACCATAAA AAACATGAAA ATCCTCTCAC TTTCACTTCT CTTGCTCTTG 
    GCCGCTACGG TCTCGGCATC CGTTCCAGGG CTCATCGAAC TCGTCGATTC 
    GAAAACCATC TTTGGGAACG TAGCCGAACT CTTAGAGAAA GAGAAACTTT 
    CCATCAACTA CGCCAACTGC AGAAGCTGGC ACCTTGGTGT TGAGACCTCT 
    AACATCATAG ACTTCGACAC GGTGCCCGCA AATTGCAAAG ACTATGTTGA 
    AGACTACTTG ATCACTTCCA AACAGTACCA ATACGACTCC AAAACCGTGT 
    GCAAAGAGGC TTATTTCTAT GCCAAAGGAC TTGCCCTAAA GAACGACACC 
    GTCAATGTTT GGATCTTTGA CCTAGATGAT ACCCTCCTCT CTAGTATTCC 
    CTACTACGCA AAATATGGAT ACGGAACAGA GAAGACCGAC CCGGGGGCGT 
    ACTGGTTGTG GTTAGGGACC GGAGCATCAA CCCCTGGACT CCCGGAGGCC 
    TTGCATCTTT ACCAAAACAT CATAGAGCTC GGGATTGAAC CCATCATACT 
    CAGTGACCGT TGGAAGTTGT GGAAGAATGT CACTCTCGAC AATCTCGAAG 
    CTGCTGGCGT GACCTACTGG AAGCATCTCA TATTGAAGCC TAATGGTTCG 
    AACTTGAGGC AAGTGGTGTA CAAGTCAAAG GTGAGGAAGA GTCTCGTGAA 
    GAAAGGATAC AACATCGTTG GCAATATCGG AGATCAATGG GCTGATTTGG 
    TTGAGGATAC CCCTGGGAGG GTTTTTAAGC TCCCAAATCC ACTCTACTAC 
    GTACCTTCTT AAGAATCTAT CTTCATCGCA TTGTCCCCTT GTATACACTT 
    CATATCTATG TCGTTTCGTT TATCTTTGTA GCCGTTTTGG CACCGCTGCA 
    TAAATAAAAT GTCTATCCTA TCGTAACTTA ATAAGTACAA AGACTTCGTA 
    CTAAATGTTG TTTTTCTTTA AAGGGGTCAT TAATTAAGTG GCCATGAAAT 
    GATATTCAC

    Gene models with high sequence identity

    1. AT5G24770.1 [+] show detail - vegetative storage protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Vegetative storage protein/acid phosphatase 1e-138
    superfamily HAD-like 3.8e-10
    HMMPfam Acid phosphatase (Class B) 4e-70
    HMMTigr Acid phosphatase, plant 3.8e-162

    See the detailed result >

    AT5G24770.1

    Model type
    Protein coding
    Short Description
    vegetative storage protein 2
    Curator Summary
    Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.
    Computational Description
    vegetative storage protein 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: vegetative storage protein 1 (TAIR:AT5G24780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR