F19240

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19240

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19240

Determination of introduced cDNA(s)

  • RAFL06-16-I17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-I17 - Resource: pda03253

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-I17 - full reading 
    AGGTGGGACA CGGAAGCTGA GCTCTAATCC TGATCGGAGA TGGCGACTAG 
    CGATTCTGAA TTCAATTCTG ATCTTCTTCT CGCTCACAAG CTTCCCGAGA 
    CGCGTTACAC CTACAATGAA AGAGATGTAG CAATCTATGC TTTGGGAATC 
    GGCGCTTGTG GCCAAGATGC TGTGGATTCC GATGAGCTCA AGTTTGTGTA 
    TCACAGAAAT GGGCAGGATT TGATCCAGGT CTTACCAACT TTTGCTTCAC 
    TATTCACACT TGGATCTTTG ACAGAAGGAC TGGATTTGCC AGGTTTTAAA 
    TATGATCCTA GTCTCTTGTT GCATGGGCAG CAGTATATTG AAATATACAG 
    GCCATTACCT TCCAAGGCTT CCTTAATTAA CAAAGTAAGC CTCGCTGGTT 
    TGCAAGATAA AGGTAAAGCA GCTATCCTTG AATTAGAAAC CAGAAGTTAC 
    GAGGAAGGGT CAGGGGAACT GTTATGCATG AATAGGACGA CTGTTTTCCT 
    AAGAGGTGCT GGTGGTTTCT CAAATTCATC TCAACCATTC TCTTACAAAA 
    ACTATCCAAG TAACCAGGGC TTAGCTGTGA AAATCCCACA AAGACAACCT 
    TTGACAGTGT GCGAAGAGCG CACTCAGCCA TCGCAGGCAT TACTTTATAG 
    GCTGTCTGGT GACTATAATC CTCTGCATTC AGATCCAGAA TTTGCAAAAC 
    TTGCCGGATT CCCACGCCCG ATATTGCATG GGCTATGCAC ACTCGGGTTT 
    GCAATCAAGG CAATCATCAA GTGTGTTTGC AAGGGTGACC CAACTGCTGT 
    CAAAACCATA TCTGGACGAT TCCTCACGAC TGTTTTTCCT GGCGAAACTC 
    TGATAACCGA AATGTGGCTT GAAGGCTTGA GGGTTATATA TCAGACGAAA 
    GTGAAGGAAA GGAACAAAAC TGTGTTAGCT GGTTATGTTG ATATTCGTGG 
    GTTATCTTCG TCACTTTAGA ATGTTAGGTC CTTAGATATA TTGGGCTGTC 
    ATAATATTGC AAAGGTAATA AACATGTCAG AAGACTCTTG ATGTTTGCTT 
    GGCGTAATGA GCCATTGAGC CATCAATAAA CACTCTTTGA TGACGGTCAC 
    AATTTACTGA AATGGTTAGT TGTATCGTGT TACTGTTGTA ATAAATGTTG 
    AGTGACGCAA AATGCACATG CCGGATGAAG CAAAATGCAT TGAAGAAAAT 
    CCTTTTTGGG TGTCAATGAA CTGGAACATA AAGCCTGAGT

    Gene models with high sequence identity

    1. AT1G76150.1 [+] show detail - enoyl-CoA hydratase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioesterase/thiol ester dehydrase-isomerase 1.1e-32
    superfamily Thioesterase/thiol ester dehydrase-isomerase 3.8e-30
    HMMPfam MaoC-like dehydratase 3.2e-28
    HMMPanther STEROL CARRIER PROTEIN X-RELATED THIOLASE 0.00071
    HMMPanther Short-chain dehydrogenase/reductase SDR 0.00071
    Gene3D no description 2.2e-37
    Gene3D no description 1.1e-38

    See the detailed result >

    AT1G76150.1

    Model type
    Protein coding
    Short Description
    enoyl-CoA hydratase 2
    Curator Summary
    Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.
    Computational Description
    enoyl-CoA hydratase 2 (ECH2); FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 2242 Blast hits to 2242 proteins in 541 species: Archae - 23; Bacteria - 1245; Metazoa - 172; Fungi - 395; Plants - 47; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR