F19322

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19322

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19322

Determination of introduced cDNA(s)

  • RAFL06-89-E09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E09 - Resource: pda17275

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E09 - full reading 
    CGATAGGAGT CATGTGTTTC TTCTTGTCTT CCTAGCTTCT TCTAATAAAG 
    TCCTTCTCTT GTGAAAATCT CTCGAATTTT CATTTTTGTT CCATTGGAGC 
    TATCTTATAG ATCACAACCA GAGAAAAAGA TCAAATCTTT ACCGTTAATG 
    GAGGAAGTAT CTCCGGCGAT CGCAGGTCCT TTCAGGCCAT TCTCCGAAAC 
    CCAGATGGAT TTCACCGGGA TCAGATTGGG TAAAGGTTAC TGCAATAACC 
    AATACTCAAA TCAAGATTCC GAGAACGGAG ATCTAATGGT TTCGTTACCG 
    GAGACTTCAT CATGCTCTGT TTCTGGGTCA CATGGTTCTG AATCTAGGAA 
    AGTTTTGATT TCTCGGATCA ATTCTCCTAA TTTAAACATG AAGGAATCAG 
    CAGCTGCTGA TATAGTCGTC GTTGATATCT CCGCCGGAGA TGAGATCAAC 
    GGCTCAGATA TTACTAGCGA GAAGAAGATG ATCAGCAGAA CAGAGAGTAG 
    GAGTTTGTTT GAATTCAAGA GTGTGCCTTT GTATGGTTTT ACTTCGATTT 
    GTGGAAGAAG ACCTGAGATG GAAGATGCTG TTTCGACTAT ACCAAGATTC 
    CTTCAATCTT CCTCTGGTTC GATGTTAGAT GGTCGGTTTG ATCCTCAATC 
    CGCCGCTCAT TTCTTCGGTG TTTACGACGG CCATGGCGGT TCTCAGGTAG 
    CGAACTATTG TAGAGAGAGG ATGCATTTGG CTTTGGCGGA GGAGATAGCT 
    AAGGAGAAAC CGATGCTCTG CGATGGTGAT ACGTGGCTGG AGAAGTGGAA 
    GAAAGCTCTT TTCAACTCGT TCCTGAGAGT TGACTCGGAG ATTGAGTCAG 
    TTGCGCCGGA GACGGTTGGG TCAACGTCGG TGGTTGCCGT TGTTTTCCCG 
    TCTCACATCT TCGTCGCTAA CTGCGGTGAC TCTAGAGCCG TTCTTTGCCG 
    CGGCAAAACT GCACTTCCAT TATCCGTTGA CCATAAACCG GATAGAGAAG 
    ATGAAGCTGC GAGGATTGAA GCCGCAGGAG GGAAAGTGAT TCAGTGGAAT 
    GGAGCTCGTG TTTTCGGTGT TCTCGCCATG TCGAGATCCA TTGGCGATAG 
    ATACTTGAAA CCATCCATCA TTCCTGATCC GGAAGTGACG GCTGTGAAGA 
    GAGTAAAAGA AGATGATTGT CTGATTTTGG CGAGTGACGG GGTTTGGGAT 
    GTAATGACGG ATGAAGAAGC GTGTGAGATG GCAAGGAAGC GGATTCTCTT 
    GTGGCACAAG AAAAACGCGG TGGCTGGGGA TGCATCGTTG CTCGCGGATG 
    AGCGGAGAAA GGAAGGGAAA GATCCTGCGG CGATGTCCGC GGCTGAGTAT 
    TTGTCAAAGC TGGCGATACA GAGAGGAAGC AAAGACAACA TAAGTGTGGT 
    GGTGGTTGAT TTGAAGCCTC GGAGGAAACT CAAGAGCAAA CCCTTGAACT 
    GAGGCAGAGA GGGTCCTTTT TCTTAATTTT TAAAATGAAT ATGGGTCTCT 
    CCAAGAAAAA GTATTTACTA TTATTAATTT GTGCTTATTT TTTTAACTAA 
    CAAGTTATAA CCATATGGAG ATAATGAAGC TTAATGTGTT AAGCTCTTTT 
    GTCTTGACTA CATTCTAAAA AGCCCCTTGT ATTTTTCTTC CCGGGCTAAT 
    TGTAATATGG TTACAACATA CATTAAGATG TAGTATTATT GTTTATGCGA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT4G26080.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein phosphatase 2C-related 8.6e-78
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 7.4e-154
    HMMPanther Protein phosphatase 2C 7.4e-154
    HMMSmart Protein phosphatase 2C-related 1.4e-114
    HMMPfam Protein phosphatase 2C, N-terminal 8.2e-75
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    Gene3D Protein phosphatase 2C-related 9.1e-76

    See the detailed result >

    AT4G26080.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Curator Summary
    Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.
    Computational Description
    ABA INSENSITIVE 1 (ABI1); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G57050.1); Has 6864 Blast hits to 6731 proteins in 444 species: Archae - 4; Bacteria - 295; Metazoa - 1756; Fungi - 772; Plants - 2717; Viruses - 7; Other Eukaryotes - 1313 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR