F19351

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19351

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: F19351

Determination of introduced cDNA(s)

  • RAFL06-82-N16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-N16 - Resource: pda17255

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-N16 - full reading 
    TGGAGTTGAA TTATGTTTAT CTGATTATTA TTCAGACCGA ACACGAAGAA 
    ACAAAAATTC AACAAAAACA AAGACAAAGT TTCGTTTTAG CTTAAAGGTT 
    CCAGATTTCG AAAAAGCTCT CTTTTTTTTT CTCCTTCGTG TTACACAACC 
    ATTTCTAGAT ATCATTTTGG TGATTAAGTT ATTTAAGAAA TGGCTGATCA 
    TTTGAGTTTA TGTACCGATC GTCTCATAAC ATCTGAGAGC TTGGACTCAG 
    AGAAAGATTC AGATTCTTCA GGAGAAAGTT CTTACCGGCC TCAAGGCACA 
    GACTTGGCTT CTTCATCTGT GAATGAAACT GAGGTTCCTA GAGAGTACTA 
    CGCGGTTGCG GATGAGGAAG AACCTCTTCT CCAATCTGTT GAGTGTCGTA 
    TTTGCCAAGA GGAAGATAGT ACTAAGAACC TTGAAGCTCC TTGTGCTTGT 
    AATGGTAGTT TAAAGTATGC TCACCGCAAG TGTGTTCAGC GTTGGTGTAA 
    TGAGAAAGGC GACATAACCT GTGAAATATG TCACCAGCCT TATCAACATG 
    GATACACTGC ACCTCCGCCT CCTCCTCCTG ATGAAACTAT AATTCACATC 
    GGTGACGATT GGGAGAACGG AGTTCCGTTG GACTTGACCG ACCCGCGCAT 
    TCTGGCAATG GCGGCTGCAG AACGTCATTT CTTGGAAGCA GACTATGATG 
    AATATTCTGA GAATAACTCA AGCGGAGCTG CCTTTTGTCG CTCTGCTGCT 
    CTCATCCTAA TGGCACTTTT ACTGTTACGA GATGCGCTAA ATCTCACAAC 
    GAACCCAGAC GACGAGGACG ATCCAACTGC CTTCTTCTCT CTATTCCTTC 
    TTCGTGCTGC TGGTTTTCTC CTCCCATGTT ACATCATGGC ATGGGCCATC 
    GGTATACTAC AACGTCGAAG ACAAAGACAG GAAGCAGCGG CTCTAGCTGC 
    CGCAGAAGTT ACTTTCATGA TACACGGTGG TGGGCCTCAA CGCAGAGGAC 
    TGCACTTTGC TGTAGCACCG CAGCCGCCGA TATCCAATGT CCCAACACCA 
    GTTTGATCCT TACCGGCAAT GATTCTCCGT TAAGGCTATT AGATAAAACC 
    TTGAACTTGG TTATAAGAAC TCTACCTACT TATGCTTCTT CAAATGTTAT 
    TATCTTCCTC TTATGTTTGT GTTATCTGAA TCTGTTAAAT GTCTACTTCG 
    GCTCTCAAAT GTTTTACAAA GAGCTCTCAC GGTATACTAT GTACAGTCTT 
    ATTATTATCA TATGATTATA TAAGTATTAT ATTTTTAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G47550.3 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3e-13
    Coil coiled-coil 0
    superfamily RING/U-box 3.9e-06
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 6e-12
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 6e-12
    HMMPfam Protein of unknown function DUF3675 3.4e-44
    HMMPfam Zinc finger, C3HC4 RING-type 1e-07
    ProfileScan Zinc finger, RING-CH-type 21.873
    HMMSmart Zinc finger, RING-CH-type 5.7e-21

    See the detailed result >

    AT3G47550.3

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 1874 Blast hits to 1869 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 852; Fungi - 126; Plants - 623; Viruses - 31; Other Eukaryotes - 242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR