F19425

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19425

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19425

Determination of introduced cDNA(s)

  • RAFL06-68-K16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-K16 - Resource: pda03304

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-K16 - full reading 
    AACCCAACAA ATTCATTCTA AATACATTTC TTTTCACTCA AGAAATTAAA 
    ATTTCGAAAA GTTTGTTAAA ATGAATGCAC ACATGCTCAA TCTCCTTGTC 
    ATAGTCATTT TTGTAGTTTC TTTCGATGTC CAAGCACTCA GTCCTCACTA 
    CTACGACCAT ACTTGTCCAC AAGCCGACCA CATTGTAACC AATGCAGTCA 
    AGAAAGCCAT GTCAAACGAC CAAACTGTCC CTGCTGCGCT TTTGAGGATG 
    CATTTCCACG ACTGTTTCGT CAGAGGATGT GATGGCTCAG TTCTCTTAGA 
    CTCTAAGGGG AAGAACAAAG CAGAGAAAGA TGGACCTCCT AACATCTCAC 
    TCCATGCATT TTATGTGATT GACAATGCAA AGAAGGCATT AGAAGAACAA 
    TGTCCCGGTA TCGTCTCTTG CGCCGACATT CTTTCACTTG CGGCAAGAGA 
    TGCTGTCGCT CTCTCAGGAG GGCCTACATG GGCAGTGCCA AAAGGGAGAA 
    AAGATGGAAG AATATCAAAG GCAATAGAAA CAAGACAACT ACCAGCTCCT 
    ACTTTCAACA TTTCTCAATT GCGTCAAAAT TTTGGCCAAA GAGGCCTCTC 
    TATGCATGAT CTTGTTGCTC TCTCTGGAGG TCATACACTA GGATTCGCCC 
    ACTGTTCATC GTTCCAGAAT AGGCTCCATA AATTCAACAC ACAAAAGGAG 
    GTTGACCCAA CACTAAACCC CTCATTCGCA GCCAGGTTGG AGGGAGTGTG 
    CCCGGCCCAT AACACGGTGA AGAATGCTGG ATCGAACATG GATGGAACCG 
    TGACGTCATT CGACAATATC TACTACAAGA TGCTTATCCA AGGCAAGTCA 
    CTATTCTCAT CCGACGAATC GCTTCTTGCA GTACCCTCTA CTAAGAAACT 
    CGTGGCCAAA TATGCAAATT CCAACGAAGA GTTCGAGAGG GCTTTTGTGA 
    AATCGATGAT CAAGATGAGT AGTATCAGTG GGAATGGCAA TGAGGTCAGA 
    CTTAACTGCA GAAGGGTTCG CTAGAATCTC AATCTACGCT TCCAACATCA 
    CGTTACTACT ACATTTTTAT GTCTTTCGTT TTCTTTCGTC ACATTGATTA 
    CTTGTGAATG GGCCTTTCTA AAGATTAAGG CAGAGGTTCT TGTATCAGAA 
    TTATCTATCA ATCTCTCGTG TGTGCTTGTA TAGGCATTTA TTTACAAGTA 
    ATAAGATCTT TTCTCTTTCT AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G42180.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 74.16
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Plant peroxidase 1.4e-47
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-31
    HMMPfam Haem peroxidase, plant/fungal/bacterial 5.1e-77
    PatternScan Peroxidases heam-ligand binding site 0
    Gene3D no description 3.8e-56
    superfamily Haem peroxidase 2.4e-100

    See the detailed result >

    AT5G42180.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G51890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR