F19434

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19434

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19434

Determination of introduced cDNA(s)

  • RAFL06-80-I11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-I11 - Resource: pda03782

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-I11 - full reading 
    ATTATACTAG CTAGCTAGTC TATATATCAT AGGGAAGAGA AAGAAAAAAC 
    ATTCTACTTC ACGCAAATAT TTTATCTCTT TGTTTCTTGT TCTTAATTAG 
    GGTTTGATTG AAGAAAATGG AAGGAGAGAA TAATATGGAG AAAGGATTGT 
    TATTGGCAAA AAAGGAAGAC AGTGCAAATA CAACTCCACT TCTTATCTTC 
    TCCACCTTCA TCATTGTCTC TGCCTCCTTC ACCTTTGGCG CTGCCATAGG 
    TTATACTGCA GATACAATGT CCTCCATTAT GTCAGACTTG GATCTTTCTC 
    TCGCACAATT TTCGCTGTTT GGTTCGTTGT CGACGTTTGG AGGAATGATC 
    GGTGCAATAT TCAGCGCCAA AGCTGCAAGT GCCTTCGGTC ATAAAATGAC 
    GTTGTGGGTG GCTGATTTAT TCTGCATAAC TGGTTGGCTT GCAATTTCAC 
    TAGCCAAGGA TATTATTTGG CTTGACATGG GGCGATTTTT GGTGGGAATT 
    GGAGTTGGTC TCATTAGCTA CGTGGTTCCT GTATATATTG CAGAAATAAC 
    ACCCAAGCAC GTAAGAGGGG CTTTTACATT TAGCAATCAG CTTTTGCAAA 
    ACTGTGGAGT TGCAGTCGTA TATTACTTTG GAAATTTCTT GTCATGGAGA 
    ACTTTAGCCA TAATAGGTAG TATTCCATGT TGGATACAAG TTATTGGTTT 
    GTTCTTCATA CCTGAGTCTC CAAGATGGCT GGCGAAAAAA GGTCGTGATA 
    AAGAATGTGA AGAAGTTCTT CAAAAGTTAA GAGGAAGAAA ATACGATATT 
    GTGCCTGAAG CTTGCGAAAT CAAGATTTCA GTTGAAGCTT CGAAGAAAAA 
    TTCGAATATC AACATTCGTA GTCTTTTCGA AAAGAGATAT GCTCATCAAC 
    TTACAATCGG CATTGGTTTG ATGCTTCTGC AACAGTTATG TGGAACTGCA 
    GGAATAAGTT CTTACGGAAG CACTCTATTT AAACTTGCCG GGTTTCCTGC 
    TCGGATTGGG ATGATGGTGT TATCTCTTAT CGTCGTACCA AAATCTTTAA 
    TGGGTCTAAT CCTCGTGGAT CGATGGGGAA GACGCCCACT TCTTATGACT 
    TCAGCGTTGG GGTTGTGTTT AAGCTGTATC ACATTGGCAG TAGCGTTTGG 
    AGTTAAAGAT GTCCCGGGAA TTGGAAAAAT TACTCCAATT TTCTGTTTCA 
    TTGGAATATT GTCGTTTACG ATGATGTTCG CAATTGGAAT GGGAGCGTTA 
    CCATGGATTA TAATGTCTGA GATATTTCCA ATGGATATAA AGGTATTAGC 
    TGGGAGTTTA GTGACCATAG CAAATTGGTT CACTGGTTGG ATCGCCAACT 
    ATGCTTTCAA TTTTATGTTG GTTTGGAGCC CAAGCGGGAC TTTTATAATA 
    TCCGCTATAA TCTGTGGAGC AACAATTGTA TTCACATGGT GCTTGGTGCC 
    GGAGACTCGA AGATTAACGT TAGAAGAAAT CCAACTGTCG TTTGTCAATG 
    TTTAGGGTTC ATCGGAAGCA TTCATATATA CATCATAAAG GTTGATATAC 
    TACATCATTT GCTACATATA ATTCGGCTTC GATCGTATCC ATAAATTATT 
    TGATTAATTC AATATAATTA ACTAAAGTTT CCATTGTTTA GTTGAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G05400.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Sugar/inositol transporter 1.4e-58
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    HMMPfam General substrate transporter 6.6e-77
    FPrintScan Sugar/inositol transporter 2.2e-13
    FPrintScan Sugar/inositol transporter 2.2e-13
    FPrintScan Sugar/inositol transporter 2.2e-13
    FPrintScan Sugar/inositol transporter 2.2e-13
    superfamily Major facilitator superfamily, general substrate transporter 5.8e-60
    ProfileScan MFS 34.453
    HMMPanther SUGAR TRANSPORTER PLANT 1.4e-184
    HMMPanther SUGAR TRANSPORTER 1.4e-184

    See the detailed result >

    AT3G05400.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1); Has 24275 Blast hits to 23828 proteins in 1815 species: Archae - 445; Bacteria - 9241; Metazoa - 4940; Fungi - 6177; Plants - 2315; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR