F19513

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19513

Determination of introduced cDNA(s)

  • RAFL07-18-H17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-H17 - Resource: pda04439

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-18-H17 - full reading
    AAGACAACCA CAAAACTCTC ACTCCAAAAC TCTCAATTTT GCCTTCCTTT 
    GATCGAATAC TACAATGGCG TCTGTATCTG CAATTGGAGT TCTCAAGGTA
    CCTCCTGCTT CGACTTCCAA TTCCACCGGA AAAGCCACGG AGGCGGTTCC
    CACGAGGACT CTTTCTTTCT CCTCCTCTGT TACTTCATCC GACGACAAGA
    TTTCACTCAA ATCCACCGTC TCCCGTCTTT GTAAATCTGT TGTTCGCAGG
    AATCCGATCA TCGTCTCTCC CAAAGCCGTC TCAGATTCTC AAAACTCTCA
    AACTTGTCTC GATCCTGATG CTAGCAGCAG TGTTTTGGGG ATAATCTTAG
    GAGGTGGAGC TGGAACTCGT CTTTATCCAC TTACGAAGAA GAGAGCGAAA
    CCAGCTGTGC CTCTTGGTGC TAACTATAGG CTTATTGATA TTCCTGTGAG
    CAACTGTTTG AATAGCAACA TATCCAAGAT CTATGTTCTT ACTCAGTTCA
    ATTCCGCGTC TTTGAATCGT CATCTTTCAC GAGCTTATGC TAGTAACATG
    GGAGGTTATA AGAATGAAGG ATTCGTTGAA GTTCTCGCTG CTCAACAGAG
    TCCTGAAAAC CCCAACTGGT TCCAGGGGAC AGCTGATGCC GTCAGGCAAT
    ACTTGTGGTT GTTCGAGGAG CATAATGTCT TGGAGTATCT CATTCTTGCT
    GGGGATCATT TGTATAGAAT GGACTATGAG AAGTTTATTC AAGCACATAG
    GGAGACTGAT GCTGATATCA CAGTAGCTGC ATTACCAATG GACGAGCAAC
    GAGCCACTGC TTTTGGGCTG ATGAAGATTG ATGAGGAAGG ACGTATTATT
    GAATTTGCTG AAAAACCAAA AGGGGAGCAC CTAAAGGCCA TGAAGGTTGA
    CACAACAATT CTAGGTCTTG ATGATCAGAG AGCCAAGGAG ATGCCTTTCA
    TTGCTAGTAT GGGTATTTAT GTTGTAAGCA GAGATGTAAT GCTAGACTTA
    CTACGGAATC AGTTTCCTGG AGCTAATGAC TTTGGAAGTG AAGTCATTCC
    CGGTGCCACT TCCCTTGGAC TGAGGGTGCA AGCTTACCTA TATGATGGTT
    ACTGGGAAGA CATTGGTACT ATAGAGGCAT TTTATAACGC TAATCTTGGA
    ATCACCAAGA AACCAGTTCC TGATTTTAGT TTCTATGACC GTTCTGCTCC
    GATCTACACA CAGCCGCGTT ATTTACCACC GTCTAAGATG CTTGATGCTG
    ATGTTACTGA CAGTGTCATC GGAGAGGGCT GTGTTATCAA GAACTGCAAA
    ATTCATCACT CTGTGGTTGG ACTCCGTTCC TGCATATCAG AAGGTGCTAT
    TATTGAAGAT TCGTTATTAA TGGGAGCTGA TTATTACGAG ACTGCTACGG
    AAAAGAGCCT CTTAAGCGCG AAAGGAAGTG TACCCATAGG TATTGGGAAA
    AACTCGCACA TCAAAAGGGC CATCATCGAC AAAAACGCAC GTATCGGTGA
    CAATGTCAAG ATCATAAACA GCGACAACGT GCAAGAGGCA GCGAGAGAGA
    CTGATGGATA TTTCATAAAG AGCGGAATTG TAACGGTTAT CAAAGACGCC
    TTAATCCCAA CCGGCACTGT CATCTGAAGT ACACATAATG CTCCTTTGTT
    TATTTCTTCA TCTTTCTAAT GCCCTATCAA TAAGTTTTCT TTATGGCTTT
    TTAAGCCCCA ATAAATCTAC TACTAGTTGT AATGCTGCTT ACGAAAGAGA
    TTACGAAATC ATGTTTTCAC

    Gene models with high sequence identity

    1. AT5G48300.1 [+] show detail - ADP glucose pyrophosphorylase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 9.2e-52
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    HMMTigr Glucose-1-phosphate adenylyltransferase 6.8e-211
    HMMPfam Nucleotidyl transferase 2.6e-72
    superfamily Nucleotide-diphospho-sugar transferases 4.2e-62
    HMMPanther GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 1.9e-211
    HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1.9e-211

    See the detailed result >

    AT5G48300.1

    Model type
    Protein coding
    Short Description
    ADP glucose pyrophosphorylase 1
    Curator Summary
    Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
    Computational Description
    ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR