F19535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19535

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19535

Determination of introduced cDNA(s)

  • RAFL08-19-J09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-19-J09 - Resource: pda05027

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-19-J09 - full reading 
    AAAAACAATT GTCTACATTC ATCTTCTTCT TCTTCAAACA AAAAATGGGT 
    TTCTTAAAGT TATCTCCAAT GATCCTTCTC CTAGCAATGA TCGGCGTTTC 
    ATATGCCATG GACATGTCAA TCATCTCCTA CGACGAAAAC CACCACATCA 
    CCACCGAGAC CAGCCGTAGC GACTCGGAGG TTGAGAGAAT CTACGAAGCG 
    TGGATGGTGG AACACGGGAA GAAGAAGATG AATCAAAACG GTCTTGGTGC 
    AGAGAAAGAT CAAAGATTCG AGATCTTTAA AGATAATCTT CGTTTCATCG 
    ATGAACATAA CACCAAAAAC CTCAGTTATA AACTTGGTTT AACCCGGTTT 
    GCTGATTTAA CCAATGAGGA GTACCGATCT ATGTACCTTG GTGCTAAACC 
    GACCAAGAGG GTTTTGAAAA CCAGTGATCG GTATCAGGCG CGTGTTGGTG 
    ACGCGCTTCC TGATTCGGTT GACTGGAGAA AAGAAGGTGC CGTCGCTGAT 
    GTTAAAGATC AAGGAAGCTG TGGGAGTTGT TGGGCATTCT CAACTATTGG 
    AGCAGTGGAA GGAATAAACA AGATTGTGAC AGGAGATTTA ATATCTTTGT 
    CTGAACAAGA ATTGGTTGAT TGTGACACAT CTTATAACCA AGGATGTAAT 
    GGTGGTTTAA TGGACTATGC GTTTGAGTTT ATTATCAAAA ATGGTGGTAT 
    TGATACCGAA GCGGATTATC CTTACAAGGC TGCTGATGGT CGTTGTGACC 
    AGAACAGGAA AAATGCTAAG GTTGTTACCA TTGATTCATA TGAAGATGTC 
    CCTGAGAACA GCGAGGCGTC TCTAAAGAAA GCTTTGGCTC ACCAGCCTAT 
    TAGTGTCGCC ATTGAAGCGG GTGGTCGCGC TTTCCAGCTC TATTCTTCGG 
    GTGTATTTGA TGGACTTTGT GGGACGGAGT TAGACCACGG TGTTGTGGCT 
    GTGGGTTATG GAACCGAGAA CGGAAAGGAC TACTGGATTG TGAGAAACTC 
    ATGGGGAAAC AGATGGGGAG AGAGCGGATA CATAAAGATG GCACGTAACA 
    TTGAAGCGCC AACAGGAAAG TGTGGAATCG CTATGGAGGC TTCGTATCCG 
    ATCAAGAAAG GTCAGAACCC ACCAAACCCT GGCCCGTCAC CACCATCTCC 
    CATTAAGCCA CCAACCACAT GTGACAAGTA CTTCTCTTGC CCTGAGAGCA 
    ACACTTGTTG TTGTCTCTAC AAGTATGGTA AGTACTGCTT CGGATGGGGA 
    TGTTGCCCGC TCGAAGCTGC TACTTGCTGC GATGATAACT CAAGTTGCTG 
    TCCTCATGAG TACCCGGTTT GTGACGTTAA CCGCGGAACC TGTTTGATGA 
    GCAAGAACAG TCCGTTTAGC GTGAAGGCTT TAAAGCGTAC ACCCGCAATA 
    CCGTTCTGGG CAAAGAGCAG AAAGCACATT GCGTAAGAAG AGGAAGACAA 
    AAACATTGAG AATTCATCAA AAGCATTTTA TGTTGTTGTT GTTCAGATTT 
    AAAAATTGCT GATTCTGCTG CTGAGGTTTT CTGTACATAT AAAACCTCTC 
    CCTAAGTTTC ATTCAGTTTC ATCATTGTTA AAGTAACTAA CTCAGAACAA 
    ATGGGTTTGG TTATTAATCT CTTTCAAC

    Gene models with high sequence identity

    1. AT5G43060.1 [+] show detail - Granulin repeat cysteine protease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 3.6e-20
    HMMSmart Peptidase C1A, papain C-terminal 1.5e-130
    HMMSmart Granulin 1.4e-25
    Gene3D no description 1.2e-117
    superfamily Cysteine proteinases 3.3e-115
    superfamily Granulin repeat 2.8e-13
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    HMMPanther CYSTEINE PROTEASE 6.9e-221
    HMMPanther Peptidase C1A, papain 6.9e-221
    HMMPfam Peptidase C1A, papain C-terminal 1.3e-87
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 1.6e-16
    HMMPfam Granulin 5.1e-12
    FPrintScan Peptidase C1A, papain C-terminal 1.2e-10
    FPrintScan Peptidase C1A, papain C-terminal 1.2e-10
    FPrintScan Peptidase C1A, papain C-terminal 1.2e-10

    See the detailed result >

    AT5G43060.1

    Model type
    Protein coding
    Short Description
    Granulin repeat cysteine protease family protein
    Computational Description
    Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT1G47128.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR