F19540

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19540

Determination of introduced cDNA(s)

  • RAFL06-15-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-E15 - Resource: pda07572

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-E15 - full reading 
    AAACTCTGTC GTTTTCCTCA GTCAGAGAGA CACAGAGAGA GAAAGAGAGA 
    AGAAGAAGCA CTCTCATGGC GAACCAGCTT CTTCACCATC TTCCGATTCC 
    TTTTCCTCTC CACCGTCACT TCTACCTCCT AAACGCCGCC GTTTTATAGC 
    TTCTCCTCCC GAAAATGCTA AACCCACATT CCTCAAATCT CTCACCGACG 
    CTTTTTTAGA TTCTTGTAGA GGAAGAGAAT ATTTTTAAGG AGGTTGTTTT 
    CGATGGAGCA TTACGAGGTT CTTGAGCAAA TTGGGAAAGG TTCTTTTGGG 
    TCAGCTCTTC TTGTGAGGCA TAAACATGAG AAGAAACTTT ATGTTTTGAA 
    GAAAATTCGG TTAGCTAGGC AGACTGGTAG AACAAGAAGG TCTGCTCATC 
    AAGAGATGGA ATTGATCTCA AAGATAAGGA ATCCATTTAT TGTGGAATAT 
    AAAGATTCTT GGGTTGAGAA AGGTTGCTAT GTGTGCATTG TCATAGGCTA 
    TTGCAAAGGC GGTGACATGG CCGAAGCAAT AAAGAAAGCC AACGGCGTAG 
    AGTTCTCTGA AGAGAAACTC TGCAAGTGGC TGGTACAACT CTTAATGGCT 
    CTTGAATACT TGCACGCCAG TCACATTCTC CATCGCGATG TCAAGTGTTC 
    AAACATATTC TTGACAAAGG ATCAAGATAT ACGCCTAGGT GATTTCGGAC 
    TTGCGAAGAT CTTGACATCT GATGACCTTG CTTCTTCAGT GGTTGGAACG 
    CCGAGCTACA TGTGCCCTGA GCTTCTTGCT GATATTCCCT ACGGGTCAAA 
    GTCGGACATT TGGTCGCTGG GTTGTTGTAT GTATGAGATG ACGGCGCTGA 
    AACCGGCATT CAAAGCCTTT GACATGCAAG GTCTGATCAA CAGGATAAAC 
    CGGTCCATCG TTGCTCCACT TCCTGCGCAA TATTCTACCG CCTTTCGCAG 
    TCTCGTTAAA AGCATGCTCA GGAAGAATCC AGAACTCAGA CCAAGCGCTT 
    CTGATCTTCT CAGACAGCCA CTACTTCAGC CCTACGTTCA AAAGGTTCTT 
    CTCAAGCTGA GCTTCCGGGA ACACGATACA TTGCCATCTG AATCCGAAAG 
    GAGAAGTAGC TATCCTCAGC AGAGAAAGCG TACTTCTGGC AAAAGTGTGA 
    GCTTCGGTCC AAGCAGGTTC GGTGTTGACC AAGAAGATTC TGTTTCTTCT 
    GTTAAACCCG TGCACACGTA TTTACACCGT CACAGGCCAG TGGATTTGTC 
    TGCAAATGAC ACTAGTAGAG TGGTTGTTCG TAGACCCGCT GTTTCTTCAG 
    TGGTTTCTAA CAGTTCAAAA TATGTGCCAG TGAGATCAAA CCAGCCTAAG 
    AGTGGTGGTC TGCTGAAACC TGCGGTAGTG ACTCGTAGGG CCTCCTTACC 
    TATCTCACAG AAACCTGCAA AAGGAACAAA AGACTCTCTA TACCACCCGA 
    ACATCGGTAT ACTCCATCAG CTAAATTCTC CAGATGTGTC AGTAAACTCG 
    CCAAGAATCG ACAGGATCAA GTTCCCGTTA GCTTCATATG AAGAAATGCC 
    TTTCATTCCC GTTGTTCGCA AGAAGAAAGG ATCGTCCAGA GGATCATACA 
    GCCCGCCTCC AGAGCCACCA CTAGACTGCT CAATAACAAA AGACAAATTC 
    ACACTTGAAC CAGAACGAGA AACCAAAAGT GATTTGTCTG ATCAAAATGC 
    AACTGCTGGA GCATCAAGTA GAGCTTCCTC AGGTGCATCA AGAAGACAAA 
    GATTCGACCC TAGCTCATAT CGACAACGAG CTGAGGCACT TGAAGGACTA 
    CTTGAATTCA GTGCAAGATT ACTTATAGAC GAGAGGTACG ATGAGCTGAA 
    CGTGTTACTA AAACCATTTG GTCCGGGAAA GGTATCGCCA AGAGAAACCG 
    CGATATGGTT GTCTAAAAGC TTCAAGGAAA GTAGTCCTAG TAACTTGGAA 
    GAAGATTGAA AAACAGGGTT TTAACTCCTT AAAAGTTTTT GAGAGCATGA 
    CGTTTCCACG ATTTGATAGA TAAATTGTTT GACTCTTAGG CTGTGTTCTT 
    TGAAGCTAAC TCCTGTATCT GATACAATGA GACCAAAATA TACAGCTTTC 
    TATTCTCTAT GTAATCCTTT ATTCAGTCTG AAACAAAAAA CATTTACG

    Gene models with high sequence identity

    1. AT5G28290.1 [+] show detail - NIMA-related kinase 3
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 1.9e-81
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.00000000000037
    ProfileScan Protein kinase, catalytic domain 45.022
    superfamily Protein kinase-like domain 6.8e-83
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.1e-60
    Gene3D no description 6.3e-56
    HMMPanther NIMA-RELATED PROTEIN KINASE, NEK 1.3e-131
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 1.3e-131

    See the detailed result >

    AT5G28290.1

    Model type
    Protein coding
    Short Description
    NIMA-related kinase 3
    Curator Summary
    Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.
    Computational Description
    NIMA-related kinase 3 (NEK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 2 (TAIR:AT3G04810.2); Has 124194 Blast hits to 122056 proteins in 3852 species: Archae - 107; Bacteria - 14304; Metazoa - 45560; Fungi - 12271; Plants - 30693; Viruses - 504; Other Eukaryotes - 20755 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR