F19541

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19541

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F19541

Determination of introduced cDNA(s)

  • RAFL15-22-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-22-L08 - Resource: pda12908

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-22-L08 - full reading 
    AGCATTTTTC AGCACTCCTT TCCTTTCCCC CACAAACTAA ACAAAAAACC 
    ATTAACAAAA AAACCATTCA CAAAAAAAAT AGAGAGAATC ATCTGAGAGA 
    GTAGTAGTGA TGATATGATC GCTTCTTCTC CTACAATCTC AGAAACCTCC 
    GATCACGGTT TTAGATATCT TCTACAACGG ATACAATGGA GAGCACCGAT 
    TCTTCCGGTG GTCCACCACC GCCACAACCT AACCTTCCTC CAGGCTTCCG 
    GTTTCACCCT ACCGACGAAG AGCTTGTTGT TCACTACCTC AAACGCAAAG 
    CAGCCTCTGC TCCTTTACCT GTCGCCATCA TCGCCGAAGT CGATCTCTAT 
    AAATTTGATC CATGGGAACT TCCCGCTAAA GCATCGTTTG GAGAACAAGA 
    ATGGTACTTC TTTAGTCCAC GAGATCGGAA GTATCCAAAC GGAGCAAGAC 
    CAAACAGAGC GGCGACTTCA GGTTATTGGA AAGCGACCGG TACAGATAAA 
    CCGGTACTTG CTTCCGACGG TAACCAAAAG GTGGGCGTGA AGAAGGCACT 
    AGTCTTCTAC AGTGGTAAAC CACCAAAAGG CGTTAAAAGT GATTGGATCA 
    TGCATGAGTA TCGTCTCATC GAAAACAAAC CAAACAATCG ACCTCCTGGC 
    TGTGATTTCG GCAACAAAAA AAACTCACTC AGACTTGATG ATTGGGTGTT 
    ATGTAGAATC TACAAGAAGA ACAACGCAAG TCGACATGTT GATAACGATA 
    AGGATCATGA TATGATCGAT TACATTTTCA GGAAGATTCC TCCGTCTTTA 
    TCAATGGCGG CTGCTTCTAC AGGACTTCAC CAACATCATC ATAATGTCTC 
    AAGATCAATG AATTTCTTCC CTGGCAAATT CTCCGGTGGT GGTTACGGGA 
    TTTTCTCTGA CGGTGGTAAC ACGAGTATAT ACGACGGCGG TGGCATGATC 
    AACAATATTG GTACTGACTC AGTAGATCAC GACAATAACG CTGACGTCGT 
    TGGTTTAAAT CATGCTTCGT CGTCAGGTCC TATGATGATG GCGAATTTGA 
    AACGAACTCT CCCGGTGCCG TATTGGCCTG TAGCAGATGA GGAGCAAGAT 
    GCATCTCCGA GCAAACGGTT TCACGGTGTA GGAGGAGGAG GAGGAGATTG 
    TTCGAACATG TCTTCCTCCA TGATGGAAGA GACTCCACCA TTGATGCAAC 
    AACAAGGTGG TGTGTTAGGA GATGGATTAT TCAGAACGAC ATCGTACCAA 
    TTACCCGGTT TAAATTGGTA CTCTTCTTAA TCAAATGTGT TTCGCCGCCG 
    GTGTGAAGAA TTTTCCGGTG ACAGTGAAGA TTTTTTTCCG ATTGGTGGGG 
    TCATTTGCAT GCATTATATA ATTTGAGATT TGTGTATATG TTTTGGGTTA 
    ATTAATTGGT CACAGGGGTT AGAGGAAGAA GATTATTTAG AGAGCGGAGA 
    AGAAGTGAGG CAACATATAG AAAACATAGG TTTAAAAAAT ATTACTGTTT 
    GTTAAGTTTA ATGATTAAAT GTATAAATCT TATACTTAGA TGTTTATATA 
    TAGTTTGTAT AGATGCATAT AGTTTCTCTC AATGCTATTT TGAGATTGTA 
    TTTTCTTGTA AAGGAAATGT TTTTTTAAAA AAAAAAAAAA AAGTTGTGTA 
    ACTATGTATT TTTCTTCACA TATGTTGAAA ATCACTGATG TTTTTGGACT 
    GAAAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G15510.1 [+] show detail - NAC domain containing protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily No apical meristem (NAM) protein 3.3e-69
    HMMPfam No apical meristem (NAM) protein 3.2e-52
    ProfileScan No apical meristem (NAM) protein 62.123

    See the detailed result >

    AT3G15510.1

    Model type
    Protein coding
    Short Description
    NAC domain containing protein 2
    Curator Summary
    Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.
    Computational Description
    NAC domain containing protein 2 (NAC2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G52880.1); Has 3051 Blast hits to 3043 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3049; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR