F19546

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19546

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19546

Determination of introduced cDNA(s)

  • RAFL04-15-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-N19 - Resource: pda12191

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-N19 - full reading 
    ACATACACTC AAAATCTTAG CGGCATTTTT TCTAAAGGTT TCCCAAAGAA 
    GGAGAGCTCA CTTTATCTTT CGTCTCTCTT CTTAGGTCTA GGGTTCTGGT 
    GGAGAAGATT GTGGTTGTTT CTTAGGGTTT TCTGAGAGAA AGCATGTTGT 
    TAACTACGGG AAGAAAGGAG AAACTCTCTG TTTCTAAAGG TTCTGAAATT 
    GAAATCTCGT CTCAAGAGTA TGAGTATGGT AGTGGAAATG TCTGGTATTG 
    TGTCATTCTC GAAGAAAATC TAGCTAAATC GAAGCGGAAG AAGCTCTCTG 
    TCCGTCACTT GGATCCTCTG CTCAAGTATG ATTATTCTCC TCCGTTAATC 
    AAAACCACCG TGCATCGTTT CATGCGTCCA GTTCCGCCGC CGGATCCATT 
    TCCAGAGGTC GATTTTGAGG AAGGTGACGT GGTTGACGCT GCTTATAAAG 
    GTGGTTGGTG TTCTGGCTCG GTGGTTAAAG TTTTGGGAAA TCGGCGTTTC 
    TTAGTGTATC TTAGATTCCA ACCTGATGTC ATTGAGCTTC TACGAAAGGA 
    TCTGCGTCCC CATTTCGTTT GGAAAGATGA AGAGTGGTTT CGATGCGAGA 
    AACAACAATT GATTGAGTCA GATTTTAGTG CTGGAAAGTC TGTTGAAGTC 
    AGAACCAAGG TAGACAAATT GGGCGATGTT TGGGCTCCGG CTATGGTCAT 
    TAAGGAGGAT GAGGATGGGA CAATGTTGGT GAAGTTGAAG ACTTTGAAGG 
    AGGAAGAGGT TAATTGCACA AAGATAAGCG TTTCTTATTC CGAAATCCGA 
    CCTTCGCCAT TGCCTATTGG TTTAAGAGAT TACAAATTGA TGGAAAACGT 
    GGATGCGCTA GTAGAGTCTG GTTGGTGTCC TGGTGTTGTT AGTAAAGTTC 
    TTGCTGGGAA GAGATACGCA GTGGATTTGG GGCCAAACAG GGAGAGTAAG 
    GAGTTTAGCC GCTTGCAGTT AAGACCTTCT ATAGAGTGGA AAGATGGAAT 
    TTGGCATAGA AAAGAAAAGG TTTCAGGTAG CGAGGAAAGT TCGCATGCAG 
    TTGAAGAAAC AGCTGCTTCA ACCCGCATAA GGATCACTGT TCGAACTGCC 
    TTGAAAGAGA AAAAAGCTTT GGGTACTGGA ATCAATGTGA GGACGACACG 
    CTCTTCTAGT GGAGCTATGC ATAACCCTCT TCCTGCCTCT TTCAATGGAG 
    GAGATGTTGC AGAGGCTGGT AGAGTATCTG TCACTGTGAA TGAAACACCG 
    CTCTTCGAAA CTGCAGCTTT ATCTGGAGAA CTAGGGAATA GTTTGGCTGA 
    TGTTGTGATG AATGAGAGCG CTCCAGTCAC AAGCCAACCG GAGATAGCAG 
    CACCAAAAGA GTTTCACCCA TCGGTAGTCC TGGGCGTAGC TGCAGCAGTC 
    AAAACACAAG GAAAAACAAC TCCGAAGAAG AAACTTCAAG CGATGAAGAA 
    TCAAAAGAGC TCTACAAATG ATTCTGTTGG AGAGAAGGTG AGTGTTAACA 
    AGAGGAAAAG AGGACAGCCA CGCAAGTTCA TAGTCGCAGA GCCTAAGCAG 
    AAGATTGGTG TGTCTGGTAA TAATTCAAAG GCTGCCACTA TTGAACATGC 
    CGATATGACT GATGATGATA GGCCTCTCGC TTCATGGGTC CACACTGGAA 
    ATTCATCATC GGGGCAATCT GTTTCTCGGA CTCCTGATAT AGGGCTTAAT 
    ACAGTTGTGG AAAAGCATGT CGATATTGTG GAAACTCCCC CAGGGAGAGA 
    GTCGACAATG GTTCTGCCAT TTGTAAAGAA GTCACAGCTT TGGAAAGTCC 
    TTGAATCAAT GGAGGTCTTC AAAGTCGTGC CACAGAGTCC ACATTTCAGC 
    CCTCTGCTAG AGAGCGAAGA AGAGTGCCGT GAAGGAGACG CCATTGGTAG 
    AATGGTGATG TTTAGTTCGC TGTTAGAGAA AGTCAACAAT CTACAAGTCG 
    ACGATCCAAT AAGCTCGATT AACAGGATCG ACGAGTGTTT CCTCAAGCTT 
    GAGAAACACG GGTTCAATGT TACAACACCT CGATCTAGGA TAGCCAAGAT 
    ACTGTCCATT AAAGAAAGGC AGACATGCGC ATTGGAGGAA TTAAAAGCTG 
    TTGAGGAAAA GATCACAGAG AATGACAATA AAAGAAGGAA GTATGAAGAA 
    GATATTGTTG AATTGCAGAG GCAAGAAGTG TTGATGAAGG AAGCAAAAGT 
    CACACTAGAC AATGAGATAG CTCGGATGCA GTCTCAAGCA GCTGTTCTTG 
    ACCAAGAGGT TCAGAATGTA GATCACGAAT TTCAGGCAAT TCTCGCTGCC 
    CCATGGAAAT AAGCAAGTCG TTGATCAAAC CTTTGTGTTT AAGAATAATT 
    GAGATCTCTG TACGTTGTTG GTAGAAAACA TAACTTTGAC TAATATATCA 
    AGTAATGTCT CTGTTCGT

    Gene models with high sequence identity

    1. AT3G62300.1 [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tudor-like, plant 0.25
    HMMSmart Tudor-like, plant 6.6e-14
    HMMSmart Tudor-like, plant 1.2e-17
    HMMSmart Tudor-like, plant 1.5e-16
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF724 4.4e-75
    HMMPfam Agenet 9.4e-17
    HMMPfam Agenet 3.5e-12

    See the detailed result >

    AT3G62300.1

    Model type
    Protein coding
    Short Description
    DOMAIN OF UNKNOWN FUNCTION 724 7
    Curator Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
    Computational Description
    DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR