F19611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19611

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19611

Determination of introduced cDNA(s)

  • RAFL06-11-B16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-B16 - Resource: pdz87579

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-B16 - 5 prime EST 
    GACTCGTCTG CCTTCTTCCG CATCTCTTTT CATTTCTCTC TGATTTCTCG 
    ATCTCTCCGT CCAACTATGT CTGCCTTCAC AAGCAAATTC GCCGATGAGT 
    TGATCGCCAA CGCTGCCTAC ATCGGCACAC CTGGAAAAGG TATTTTGGCT 
    GCTGATGAGT CCACTGGTAC CATTGGAAAG CGTCTTGCGA GCATCAACGT 
    CGAGAACGTT GAGACCAACA GACGTAACCT CCGTGAGCTT CTCTTCACCG 
    CCCCTGGTGC TCTTCCATGC CTCAGTGGTG TCATCCTTTT CGAAGAGACT 
    CTGTACCAAA AGAGTTCCGA TGGTAAGCTT TTCGTTGATA TCTTGAAGGA 
    AGGAGGAGTT CTTCCCGGTA TCAAGGTTGA CAAGGGTACC GTTGAGCTAG 
    CTGGAACCGA CGGTGAGACC ACCACTCAAG GTCTTGACGG TCTCGGTGAC 
    AGATGCAAGA AGTACTACGA AGCTGGTGCT CGTTTCGCCA AGTGGCGTGC 
    AGTCCTCAAG ATCGGAGAGA ACGAGCCATC TGAGCATTCC ATTCATGAGA 
    ACGCTTACNG ATTAGCTAGA TACGCTGTTA TCTGCCAAGA GAACGGTCTT 
    GTACCAATTG TCGAGCCTGA GATCCTAGTC GATGGATCCC ATGACATNCA 
    NAAGTGTGCT G

    Gene models with high sequence identity

    1. AT3G52930.1 [+] show detail - Aldolase superfamily protein
      E-value: 0; Score: 99.55

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-B16 - 3 prime EST 
    CAAATTCCAC AAGAGGTTCA ACAGAAATAA CCTCAAATGA CTTTTTTATT 
    TGGGCAGTGT TTTTAAAATA CTCAATTCTA AAAAACAAAA CCCAATCAAA 
    ATCAAAACAC AAATCCAAAA GGAAAATGAA GAAAAAACAC TTATAATCCG 
    ATAATGTCAA GTAGAAAAAC GAAAAATCCC TAGAAATATA TCCAGGAAGA 
    TGACAAACGT CACAATTCAA CCCGTGGACG ATGCTCAGTA CTTGTAATCC 
    TTCACGTGAA GGCTCTCAGC TGCTCCATCA CCAAGCTTAG CGTCACCCTT 
    GTAGGTTCCG AGTGTGGCTT CAGAGTTAGC CTTGCACCTC ACATACAACG 
    CCTCTTGAGC TGCCTTGACA TTCTCCTCTT TACCTGCCCA TGTCTTCAAG 
    GTAGACTGCT GCAACGCACG TCCGAATGAG AAAGACAATG ACCATGGCTT 
    CTTGGTCTTC AACTGGTTCA TGGCGTTCAA GTTCCTGGTA GCTTCTTCCT 
    CGCTCTGTCC TCCAGATAAG AAGACAATGG CTGGAACAGC TGCTGGGACG 
    GTTCTCTGAA GGGCACGGAC GGTGTGCTCA GCGATGACTT CAGGTGAAAC 
    CTTGGGGCTG TCAGATCC

    Gene models with high sequence identity

    1. AT3G52930.1 [+] show detail - Aldolase superfamily protein
      E-value: 0; Score: 99.84

    AT3G52930.1

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to karrikin, response to salt stress, pentose-phosphate shunt; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT2G36460.1); Has 5003 Blast hits to 4997 proteins in 974 species: Archae - 0; Bacteria - 709; Metazoa - 1414; Fungi - 8; Plants - 477; Viruses - 0; Other Eukaryotes - 2395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR