F19618

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19618

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19618

Determination of introduced cDNA(s)

  • RAFL21-01-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-01-E14 - Resource: pda11733

    full reading [+] show sequence

    Nucleotide sequence: RAFL21-01-E14 - full reading 
    TTCCTTTCCC TTTTTGGCGC TCAATACAAT CATGACGTTA GAGAGTTACG 
    CCGGCGATGT TCACACGGTA CCACAATCGG AGAACTCGAT GGAGGAGAGA 
    GGCGGCGGTG AGCTTTTCGT GCCACCTCTT AACTTCGCTA TGGTCGATAA 
    TGGAATTTTC CGTTCTGGTT TTCCTGAACC CGTCAGTTTC AGCTTTCTCC 
    AGTCTTTGCG TCTCAAATCC ATCATATATT TGTGTCCTGA GGCATATCCA 
    GAGGTGAATA GAGAGTTTGC AAAATCAAAT GGGATCCAAG TTTTTCAATT 
    TGGAATTGAA AGATGCAAGG AACCATTTGT TAATATCCCT GACGAGGTAA 
    TCCGAGAAGC CTTACAAGTA CTTCTAGATA CAGAGAATCA TCCTGTCTTG 
    ATTCATTGCA AAAGTGGAAA GCATCGGACG GGATGTCTTG TAGGTTGTGT 
    GAGGAAGATT CAAAGATGGT GTTTGTCTTC TATCTTCGAC GAGTACCAAA 
    GATTCGCAGC TGCGAAAGCT AGAATCTCAG ACCAGAGATT CATGGAGCTC 
    TTTGACATCT CCAATCTAAA GCATACACCA CTTTCCTTCT CATGCTCCAA 
    GAGGTATACT AATACTATTG ATTACTGAAG AAAAAAATGT ATAACTTTGT 
    GTTGAATGCA ACTTGTAGTT TTGAAGCTAG ATGAAAATGG GAGATTTTGA 
    TCTTTCAATA AAAGTCCGTT TATTCCAAAT CT

    Gene models with high sequence identity

    1. AT4G03960.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 9.132
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 7.5e-30
    HMMPfam Protein-tyrosine phosphatase, SIW14-like 2.2e-60
    superfamily (Phosphotyrosine protein) phosphatases II 6.4e-24
    PatternScan Protein-tyrosine phosphatase, active site 0
    Gene3D no description 4.1e-57

    See the detailed result >

    AT4G03960.1

    Model type
    Protein coding
    Short Description
    Phosphotyrosine protein phosphatases superfamily protein
    Computational Description
    Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT1G05000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR