F19621

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19621

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19621

Determination of introduced cDNA(s)

  • RAFL05-02-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-N23 - Resource: pda07233

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-N23 - full reading
    ACACTCCTTA TCTTCTTCAT TCCTCCATCC TATTTTTCTT CTTCGCCAAA 
    GTGTTATTCC TCAACTTTAT ATATTACACA AATGTCTTTA GCCGCGGATA
    ATGTGTTGTT GGTGGAAGAA GGAAGGCCAG CCACAGCGGA ACATCCATCG
    GCCGGACCGG TTTATCGATG TAAATACGCT AAAGATGGCC TCCTCGATCT
    CCCTACCGAT ATTGATTCTC CTTGGCAGTT CTTTAGTGAG GCTGTGAAGA
    AATATCCGAA TGAGCAAATG TTGGGCCAAC GCGTAACGAC TGATTCTAAG
    GTCGGTCCAT ACACGTGGAT CACATATAAG GAAGCGCACG ACGCTGCAAT
    TCGGATTGGA TCAGCAATCA GAAGCCGAGG CGTTGATCCG GGACACTGTT
    GTGGTATTTA CGGAGCTAAT TGTCCAGAAT GGATTATTGC AATGGAGGCC
    TGCATGAGCC AAGGGATCAC CTACGTGCCT CTATACGATT CTTTAGGCGT
    AAACGCAGTT GAATTCATCA TCAACCACGC CGAGGTTTCG CTAGTATTTG
    TTCAAGAGAA GACAGTTTCA TCGATCTTAT CGTGCCAAAA GGGATGTTCT
    TCGAATTTGA AGACTATTGT GAGCTTCGGG GAAGTCTCGA GTACACAAAA
    GGAAGAAGCT AAGAACCAAT GTGTTTCTTT ATTTTCATGG AATGAGTTCT
    CACTAATGGG AAACTTAGAT GAGGCAAATC TACCTCGTAA GCGAAAGACA
    GACATCTGCA CAATAATGTA CACAAGCGGG ACGACTGGAG AACCCAAAGG
    TGTAATCTTA AACAACGCAG CAATTTCGGT CCAGGTTTTA TCCATAGACA
    AAATGCTTGA AGTCACTGAT CGATCGTGTG ACACGAGCGA TGTGTTCTTC
    TCGTACTTGC CATTAGCACA TTGCTATGAT CAAGTCATGG AGATTTACTT
    TTTATCTAGA GGCTCCTCTG TTGGATACTG GCGTGGCGAC ATTCGGTACC
    TGATGGATGA TGTTCAAGCT CTTAAACCTA CTGTGTTTTG CGGTGTTCCA
    CGAGTTTACG ACAAACTATA TGCCGGTATA ATGCAAAAAA TATCAGCTAG
    TGGCTTGATA CGCAAGAAAC TGTTTGATTT TGCTTATAAC TACAAATTGG
    GAAATATGAG AAAAGGATTC TCTCAAGAAG AAGCTTCTCC TCGTCTAGAC
    AGACTTATGT TCGATAAGAT AAAAGAAGCA TTAGGAGGAA GAGCTCATAT
    GTTGTTATCA GGAGCAGCGC CTCTACCTCG TCATGTAGAG GAGTTCTTGA
    GAATCATTCC TGCCTCTAAT CTCTCTCAAG GTTATGGATT GACTGAGAGT
    TGTGGGGGAA GCTTCACGAC CTTAGCCGGA GTATTTTCTA TGGTGGGGAC
    AGTGGGTGTG CCAATGCCCA CGGTGGAGGC AAGGCTAGTG TCCGTACCAG
    AGATGGGTTA CGACGCCTTT TCCGCTGACG TGCCGAGAGG AGAGATTTGT
    CTTAGAGGAA ATTCAATGTT TTCTGGTTAC CATAAAAGAC AAGATCTAAC
    TGATCAAGTC CTAATCGATG GATGGTTCCA CACAGGAGAT ATTGGAGAAT
    GGCAAGAAGA TGGATCAATG AAGATCATCG ATAGGAAGAA GAACATCTTC
    AAGTTGTCTC AAGGTGAATA TGTTGCTGTT GAAAACCTCG AAAACACTTA
    CTCAAGATGT CCCCTCATTG CTCAGATATG GGTCTATGGC AACAGCTTCG
    AGTCATTTTT GGTAGGTGTG GTTGTACCTG ATAGAAAAGC TATTGAAGAT
    TGGGCTAAAC TCAATTACCA ATCTCCCAAT GATTTCGAAT CTCTATGTCA
    AAATCTCAAA GCTCAAAAAT ACTTCTTGGA TGAGCTTAAC TCTACCGCAA
    AGCAATATCA ACTTAAAGGA TTTGAAATGT TAAAAGCTAT TCATTTAGAA
    CCAAACCCTT TTGATATTGA AAGAGATCTT ATTACTCCAA CTTTCAAGCT
    GAAAAGGCCA CAGCTCCTCC AACATTACAA GGGCATAGTT GATCAACTTT
    ATTCAGAAGC AAAGAGGTCC ATGGCATAGA TAATTAGATA CCGATCGGCT
    ATTCATTTTC TGATGCTATT TGGGTTTGTA TGATATGTTA CAAAATTGTG
    TTCGGATCCT CTCATCATGT GATTCTTGTT ACACTAAATT TATAGTTTGG
    AAACTATATA TATACTATTA AGCAACGTTT ACG

    Gene models with high sequence identity

    1. AT1G49430.1 [+] show detail - long-chain acyl-CoA synthetase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam AMP-dependent synthetase/ligase 3.1e-102
    Gene3D no description 5.6e-30
    Gene3D no description 0.000018
    Gene3D no description 3.5e-17
    PatternScan AMP-binding, conserved site 0
    HMMPanther LONG-CHAIN-FATTY-ACID COA LIGASE 6.3e-289
    HMMPanther ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBE 6.3e-289
    superfamily Acetyl-CoA synthetase-like 5.9e-117

    See the detailed result >

    AT1G49430.1

    Model type
    Protein coding
    Short Description
    long-chain acyl-CoA synthetase 2
    Curator Summary
    Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
    Computational Description
    long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR