F19707

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19707

Determination of introduced cDNA(s)

  • RAFL04-09-C19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-C19 - Resource: pda00234

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-C19 - full reading 
    ACGTTTACTT TTATTATAAA CAGATTTCTG GAGATATCGA GAACATTTTC 
    GCAGCCGCAA GCTACAAAAC TTTTGATCCC AAATTCAACA GATATCTCTG 
    AATCTATCGC TTCCAAGGGT TTTCTCTAGC TTAATCTCAG ATTCGAATCG 
    TTCCATAGTG ATACTATGCC GAAGAACAAG GGAAAGGGAG GAAAGAACAG 
    GAAGAGAGGA AAGAACGAAG CAGATGACGA GAAGAGAGAG CTTATATTCA 
    AAGAAGATGG ACAAGAATAC GCACAAGTCC TTCGTATGCT TGGAAATGGA 
    AGATGTGAAG CTATGTGTAT CGATGGAACC AAGCGTCTTT GCCATATCCG 
    TGGTAAGATG CATAAGAAGG TTTGGATTGC AGCAGGTGAT ATTGTGCTTG 
    TTGGTTTGAG GGATTACCAA GATGACAAAG CGGATGTGAT CCTTAAGTAC 
    ATGTCTGATG AGGCTAGGCT TCTTAAGGCT TATGGTGAGC TTCCAGAGAA 
    TACTCGTCTT AATGAAGGAA TTGTTGGTGA TCTTGAGGAT GATGATGATA 
    ATAATGATGA TGACTATGTT GAGTTTGAGG ACGAAGATAT CGATAGGGTC 
    TAAGGCTTTG TTTGTTTTTT TTTTTTCCGG CTTGTATTTC CAATTTGTGA 
    GACGTATGAC TTCTGGTGAT AAAACATCAC TGTTGTTGCA AGATACTTAC 
    TGTTTTATAT TTTGTTCTTC AATATCTCTA TTGTTGGTTC C

    Gene models with high sequence identity

    1. AT2G04520.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam S1, IF1 type 2.1e-27
    PatternScan Translation initiation factor 1A (eIF-1A), conserved site 0
    HMMPanther Translation initiation factor 1A (eIF-1A) 8.9e-78
    superfamily Nucleic acid-binding, OB-fold-like 5.4e-50
    HMMSmart Translation initiation factor 1A (eIF-1A) 6.2e-49
    Gene3D Nucleic acid-binding, OB-fold 7.5e-53
    ProfileScan S1, IF1 type 31.796
    BlastProDom Translation initiation factor 1A (eIF-1A) 1e-25
    HMMTigr Translation initiation factor 1A (eIF-1A) 1.3e-34

    See the detailed result >

    AT2G04520.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR