F19710

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19710

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19710

Determination of introduced cDNA(s)

  • RAFL05-14-N22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-N22 - Resource: pda07317

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-N22 - full reading 
    AACGCCCACA ACGAAAAGGA ACTTCTCTTT TTGTTTGGTG ACTGAATCGG 
    TGGAAAACAA CACAAGTTTG TTCCTTTTTG TCTCTCCAGA TCCCTTGGCT 
    TCCTTCTTCT TCTTCATCCT CCTCGTGAGA CTCTGTGTTG AAATTTCTCT 
    AGGGTTTTAA TTATCGGCGT TGGTTTTTCG TTTTTGAGAA TTTGATTTCG 
    TTTTTAGAAA TAATGGGTGA TTGGGCTCAA CTTGCTCAGT CTGTGATCCT 
    AGGTTTGATT TTCTCTTACC TTCTCGCTAA GCTGATCTCG ATCGTCGTCA 
    CGTTTAAAGA AGACAATCTC TCTCTTACTC GTCACCCAGA GGAGTCTCAA 
    TTGGAAATTA AACCGGAAGG AGTTGACTCG CGACGTCTCG ATTCCTCTTG 
    CGGTGGTTTC GGTGGTGAGG CGGATTCGCT TGTGGCGGAG CAGGGTAGCT 
    CCCGAAGTGA TAGCGTTGCC GGTGACGACA GTGAGGAAGA TGATGATTGG 
    GAAGGCGTCG AGAGCACGGA ACTCGATGAG GCTTTTAGCG CCGCCACTCT 
    TTTTGTGACT ACCGCCGCCG CAGATCGGCT TTCGCAGAAG GTACCGAGTG 
    ATGTGCAGCA GCAGCTTTAC GGATTGTATA AGATTGCTAC GGAAGGGCCG 
    TGTACTGCTC CTCAGCCATC AGCTCTCAAA ATGACTGCTC GTGCCAAGTG 
    GCAAGCATGG CAGAAACTGG GAGCTATGCC ACCTGAAGAG GCGATGGAGA 
    AGTATATTGA GATTGTCACT CAGCTTTACC CAACTTGGTT AGACGGTGGC 
    GTGAAAGCCG GAAGTCGGGG TGGGGATGAT GCAGCCTCCA ACTCAAGAGG 
    AACCATGGGA CCAGTTTTTA GCTCTTTGGT TTATGATGAG GAGTCCGAAA 
    ATGAGTTGAA GATTGATGCC ATACACGGAT TTGCTAGAGA AGGAGAAGTC 
    GAGAATTTAC TGAAAAGCAT TGAAAGCGGC ATTCCTGTAA ATGCAAGGGA 
    CAGTGAAGGT CGCACACCAT TGCACTGGGC TATAGACCGT GGCCACCTCA 
    ACATCGCCAA AGTTCTGGTC GATAAGAACG CCGATGTGAA TGCTAAGGAC 
    AACGAAGGCC AAACCCCTTT GCATTATGCT GTTGTATGCG ACAGAGAAGC 
    TATCGCCGAG TTTCTGGTTA AACAGAACGC AAACACAGCC GCTAAAGATG 
    AGGATGGAAA CTCTCCCCTT GATCTCTGTG AATCAGACTG GCCCTGGATC 
    CGAGATTCTG CAAAGCAGGC AGACTAAACA AATACTAACC ACGTCTTCTC 
    TAAATCCGCA ATGTATATGA TCAAATGACT TAGTAAGAAG CTTTTCTTTA 
    CTTTAAACTT TCTTTCCATC CCTACCACAT CACTGGGATG TTCCAACACT 
    ATATCACTTG GATGTTACCA AGTCTTGTTC TTTGATTTCT TTCTTCTTAC 
    ATTTTAACAA TCTTTTGTTC CTTTAGGCTT TATGATATGT CGT

    Gene models with high sequence identity

    1. AT4G27780.1 [+] show detail - acyl-CoA binding protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Acyl-CoA-binding protein, ACBP 8.3e-25
    HMMPfam Ankyrin repeat 2.3e-11
    HMMPfam Ankyrin repeat 4.7e-07
    superfamily Ankyrin repeat-containing domain 5.9e-33
    superfamily Acyl-CoA-binding protein, ACBP 1e-25
    Gene3D FERM/acyl-CoA-binding protein, 3-helical bundle 2.5e-22
    Gene3D Ankyrin repeat-containing domain 4.2e-29
    FPrintScan Acyl-CoA-binding protein, ACBP 4.3e-07
    FPrintScan Acyl-CoA-binding protein, ACBP 4.3e-07
    FPrintScan Acyl-CoA-binding protein, ACBP 4.3e-07
    FPrintScan Ankyrin repeat, sub-type 9e-05
    FPrintScan Ankyrin repeat, sub-type 9e-05
    HMMPanther ACYL-COENZYME A BINDING DOMAIN CONTAINING 6 9.7e-28
    HMMPanther ANKYRIN REPEAT-CONTAINING 9.7e-28
    ProfileScan Ankyrin repeat 15.654
    ProfileScan Ankyrin repeat 11.808
    ProfileScan Ankyrin repeat-containing domain 31.935
    ProfileScan Acyl-CoA-binding protein, ACBP 37.952
    HMMSmart Ankyrin repeat 4.5e-08
    HMMSmart Ankyrin repeat 0.005

    See the detailed result >

    AT4G27780.1

    Model type
    Protein coding
    Short Description
    acyl-CoA binding protein 2
    Curator Summary
    Encodes acyl-CoA-binding protein with ankyrin repeats
    Computational Description
    acyl-CoA binding protein 2 (ACBP2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 1 (TAIR:AT5G53470.1); Has 90208 Blast hits to 29988 proteins in 1366 species: Archae - 152; Bacteria - 8068; Metazoa - 46498; Fungi - 7104; Plants - 3511; Viruses - 860; Other Eukaryotes - 24015 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR