F19718

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19718

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19718

Determination of introduced cDNA(s)

  • RAFL06-10-M10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-M10 - Resource: pda02991

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-M10 - full reading 
    AGGGTTTTCG TCTCTTTCAC TCGTAACCGG AAGAGAGGAC AAGATCCTCC 
    ACTAATTTCA CAAAAAGCTC ATCTTTTTAT TCGTTTTCGA ATCGATTCGT 
    TATCTGGGTT CAAGTATCAA ATTCTCTGGT TTCGTTTTTC GTTTTTGATT 
    TGTTCTCTCT CTTTCGGAAA AAGTTTGGTT TTTTTTTTTT GTTTGAAACA 
    ATGGGAAGAG GCAAGTTCAA GGGTAAACCT ACCGGCCAAC GCCGATTCTC 
    TAGTGCTGCT GATATTCTTG CTGGCACATC TGCTGCACGT CCTCGATCAT 
    TCAAACAGAA AGAAGCTGAG TACGAAGAAG ATGTTGAAGA AGAGTCAGAG 
    GAGGAATCTG AAGAAGAATC CGAAGATGAA GCTGATGTGA AGAAGAAAGG 
    AGCTGAAGCT GTTATCGAAG TTGATAACCC TAACAGAGTA AGACAAAAGA 
    CCTTGAAAGC AAAAGACCTC GATGCTAGTA AAACCACTGA ACTCTCAAGG 
    CGTGAAAGAG AGGAGCTAGA GAAGCAGCGA GCTCATGAGC GATACATGAG 
    GTTGCAAGAG CAAGGCAAAA CCGAACAAGC AAGGAAGGAC TTGGATCGTT 
    TGGCTCTGAT TCGCCAACAG AGAGAAGAAG CTGCCAAGAA GCGAGAAGAG 
    GAAAAAGCCG CAAGAGACGC TAAGAAAGTC GAAGGGCGCA AATGAGAAGT 
    GATCACACTC AAAAGACCTG CCTACTATGC GATTAAGATG TGTTGTTTTT 
    ACTTTGTTCT TTTTCGATTG ATAAAAGATA AAACCTCTGC TATTTACTCT 
    GTTATCTCTC GATTTTAAGT TCGGTTTAAA AGGATTGGAT GTAGTTCAAA 
    ATATAAACTC GTTTAAGATT TATGCGTGGA AGCTTCCTCA G

    Gene models with high sequence identity

    1. AT5G46020.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Ha...
      E-value: 0; Score: 99.78

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Casein kinase substrate, phosphoprotein PP28 1.7e-29
    HMMPanther 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN ( 1.9e-35
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G46020.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR