F19731

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19731

Determination of introduced cDNA(s)

  • RAFL09-80-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-80-B19 - Resource: pda09918

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-80-B19 - full reading 
    AAAGAAGAAA GAAGAAGAAT AAAAGACAAG GCTTGAACGT CCGGTGAAAG 
    AAAGAATTCA GCTTTCCGCA CTAACCACTT CTGAATCCTA ACCAACAAGC 
    TTCTCCATTT CGTTTTTCGC GTCTCGATTC CAAATTCCAC TTAAGACGGC 
    GGATTTTCTC ACCGGGAAAT TGGTTTTAGA TGGATAGGAC TGAGGAAATC 
    GAAGAATCCC CCGCCGGACC TTCTTCCGGA TCCGCGAAAT TGAAGCTCGG 
    AAACAGAGCA GATCCTTTCC TTGTTGTTTG TAGATGCTTC AGCCTCGTTA 
    CCTCTCTCAT CGCCATTCTC TGTGTTGTCG TTAACGTTCT CGCTGCCGTT 
    CGCTCCTTCC GTGACAGCCA CGATCTCTTC GATGGAATAT TCCGGTGTTA 
    TGCTGTGGTG ATTGCTTGTT TTGTTGTTCT CGTTGAGACT GAATGGGGTT 
    TCATTCTCAA ATTTTCCAAG GTTCTTGAAT ACTGGGCTGG TAGAGGAATG 
    CTTCAAATTT TGTAAGTACA TCTATACAGC TTAGTAACCT TCTTTTGTAC 
    CTCTTGTGTT GGAATGGATC GTGTTGTTCT TTTATGATGT GTTTTTTGAG 
    TGCTGCTTCA GCTAATTCCA GGCCAGGTAC TCAAAAATGA GACCATTCCT 
    TGGTTGCTGT ATGATTTTAT GTTTTATGTA TATATCTTTA CTTTGTTCAT 
    TTCAGTGTTG CTGTGATGAC AAGAGCTTTC CCTGACTATA TGACTCAAAA 
    GAAGGATCTC CTGCTTCTAC AGAACATCGC AAGCTACTTG CTTCTTGCTT 
    GTGGTGTTAT CTATGTCATT TCTGTACGCT ATCACCATTC ATCCTATTAT 
    ATCACATCTG CTTATTCCCT CTCTGCTCTC GCTTATTGTT GAATCTTTTC 
    GTATTAGTTT GTGCCTTGTG GTTGCATCTT GCTTATAAGA ATGCATTTCA 
    CTTGAAAACG ATTCTTGGTT TGTTGTAAGA ACTCATGTTG ACACTTTGTC 
    CCCAGACCTT TAGGATCACT TGGATAACTC CCAACTCTGA ACAATAGATG 
    CTTGATGTGG TGGTTAGCGA ATCTGTAGGG CTATTTCTAA CTTGAAAAAT 
    GAGCTTCTTG GGCAATCACT TCCTTTGTTT TTCAATATCT GAGTTCCCGT 
    TTATGTTTTC ACTGTCAATC TTTGATCGTT GTCTGAACTT CAGGGAGTTC 
    TCTGCATCGG CTTTCTGAAG CGTGCTCGAC AGCAAAAGGA AGTTTCAAGA 
    GAACAAGCAG TCAAGGATCT TGAGGAGATA GCCCGACGCA AGGAAGAGTT 
    GGAACAATTG CTCCTGGAGC ATCAGAGTAG AGACGAAGAC GTGTGAATGT 
    GAATGGACGA CGACATCAGT TTCTTTTTGT ATTAAAGCAT TGTGTGAGCT 
    CTCGGTTTTC ATCCTCCCAC TTGGATAATA ACAGCAGATT CTTTTGTTTT 
    TTGTCTGTTG AAAAACAAAG CTTTGATACT GGTCGTATAA GAGACGAGCA 
    CTATTGAATA TAAAATTTGA CATGAT

    Gene models with high sequence identity

    1. AT4G33625.2 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: pl...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Golgi apparatus membrane protein TVP15 1.6e-05
    Coil coiled-coil 0

    See the detailed result >

    AT4G33625.2

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR