F19802

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19802

Determination of introduced cDNA(s)

RAFL05-05-M05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-05-M05 - Resource: pda01028

full reading [+] show sequence

ATCGGTGAGG TTGAGAGTAA TTCACTACAC ACACACAAAA AATAAATTGA 
GTGCCTCCCC CAAAAACAAA ATTGGTAGAT AACGAGCAAT TGTTTTTTTT 
CAGATTTGAT CCTGAATTTT TACATTTTTT TTTTTGCAAT CTCCCCCTAA 
TCTGTTGTTT CTCGCTTCTT CTTCTGTTAA TCATCTGTCT TTCAAAAAGA 
AAGAAAAAAG AAAAATTCGA TTTCTGGGTT TGTTTTTGTC ATACAGAAAA 
AAATCAAGCT TATGAATTTG TGTTTAATTT TTTGTTTTAA TTTGAAAGGC 
AGGTTTTTTC AGAACGAGAT CGTTTTTTCA AATTTCTTCT GATTTTACCT 
CTTTTTTTCT TCTTAGATTT TAGTGAATCG AGGGTGAAAT TTTTGATTCC 
CTCTTTTCGG ATCTACACAG AGGTTGCTTA TTTCAAACCT TTTAGATCCA 
TTTTTTTTTA ATTTTCTCGG AAAAATCCCT GTTTCTTTAC TTTTTTATAA 
GTCTCAGGTT CAATTTTTTC GGATTCAAAT TTTTATTTTA AATGGCAGCT 
GCTATGAATT TGTACACTTG TAGCAGATCG TTTCAAGACT CTGGTGGTGA 
ACTCATGGAC GCGCTTGTAC CTTTTATCAA AAGCGTTTCC GATTCTCCTT 
CTTCTTCTTC TGCAGCGTCT GCGTCTGCGT TTCTTCACCC CTCTGCGTTT 
TCTCTCCCTC CTCTCCCCGG TTATTACCCG GATTCAACGT TCTTGACCCA 
ACCGTTTTCA TACGGGTCGG ATCTTCAACA AACCGGGTCA TTAATCGGAC 
TCAACAACCT CTCTTCTTCT CAGATCCACC AGATCCAGTC TCAGATCCAT 
CATCCTCTTC CTCCGACGCA TCACAACAAC AACAACTCTT TCTCGAATCT 
TCTCAGACCA AAGCCGTTAC TGATGAAGCA ATCTGGAGTC GCTGGATCTT 
GTTTCGCTTA CGGTTCAGGT GTTCCTTCGA AGCCGACGAA GCTTTACAGA 
GGTGTGAGGC AACGTCACTG GGGAAAATGG GTGGCTGAGA TCCGTTTGCC 
GAGAAATCGG ACTCGTCTCT GGCTTGGGAC TTTTGACACG GCGGAGGAAG 
CTGCGTTGGC CTATGATAAG GCGGCGTACA AGCTGCGCGG CGATTTCGCC 
CGGCTTAACT TCCCTAACCT ACGTCATAAC GGATCTCACA TCGGAGGCGA 
TTTCGGTGAA TATAAACCTC TTCACTCCTC AGTCGACGCT AAGCTTGAAG 
CTATTTGTAA AAGCATGGCG GAGACTCAGA AACAGGACAA ATCGACGAAA 
TCATCGAAGA AACGTGAGAA GAAGGTTTCG TCGCCAGATC TATCGGAGAA 
AGTGAAGGCG GAGGAGAATT CGGTTTCGAT CGGTGGATCT CCACCGGTGA 
CGGAGTTTGA AGAGTCCACC GCTGGATCTT CGCCGTTGTC GGACTTGACG 
TTCGCTGACC CGGAGGAGCC GCCGCAGTGG AACGAGACGT TCTCGTTGGA 
GAAGTATCCG TCGTACGAGA TCGATTGGGA TTCGATTCTA GCTTAGGGGC 
AAAATAGGAA ATTCAGCCGC TTGCAATGGA GTTTTTGTGA AATTGCATGA 
CTGGCCCAAG AGTAATTAAT TAAATATGGA TTAGTGTTAA ATTTCGTATG 
TTAATATTTG TATTATGGTT TGTATTAGTC TCTCTGTGTC GGTCCAGCTT 
GCGGTTTTTT GTCAGGCTAG ACCATGCCAC AGTTTTCATT TTATGTAATC 
TTTTTTTCTT TTGTCTTATG TAATTTGTAG CTTCAGTTTC TTCATCTATA 
ATGCAATTTT ATTATGATTA AGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

AT1G78080.1 [+] show detail - related to AP2 4
E-value: 0; Score: 99.89

InterPro Scan Digest

Program	Description	E-value
superfamily	DNA-binding, integrase-type	8.2e-25
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	9.3e-18
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1e-37
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.1e-23
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	23.169
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	3.1e-11
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	3.1e-11

See the detailed result >

AT1G78080.1

Model type: Protein coding
Short Description: related to AP2 4
Curator Summary: Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.
Computational Description: related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink).
Link: InterPro Scan - TAIR