F19832

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19832

Determination of introduced cDNA(s)

  • RAFL09-14-D01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-D01 - Resource: pda17645

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-D01 - full reading
    CCGACAATCT CTCCATTTCT CTCTCTTCCG TCTCTTTTTT TATCTCTCTC 
    TCTAGAATCT TGAAGAGAGC GAGCTTCCAT TAAAATCTCA TTCTAACGAT
    CTCCAAGCTC TTTCTTCAAT CATCTCCAGG GGAATGTCAG AGAGTACTAA
    TGAAGATAGT GGAGCAGGAA GATCATCACT GGAAGAGAAT TCAAATGGAC
    AAAGAAGTCA ATCAGAAGAA GCAATCGCTG AGTGGCGTTC TTCTGAACAA
    GTTGAGAATG GAACTCCTTC TACATCTCCA CCGTATTGGG ACATCGATGA
    TGATGACGAT TTTGGATCAA AACCATCTCA ACTATTTGGG AAAAATACTT
    GGACGATTGA GAAATTTTCA GATATCAACA AACGAGAGCT CCGCGGCGAT
    GTTTTTGAAG TCGGGGGTTA CAAATGGTAT ATATTAATTT ATCCACAAGG
    GTGTGATGTT TGCAACCATC TCTCTTTGTT TCTATGTGTT GCACACCATG
    AAAAGCTTCT TCCAGGCTGG AGTCATTTTG CTCAGTTTAC TATAGCTGTG
    TCGAATAAAG ATCCGAAGAA GTCAAAGCAT TCAGATACGT TACACCGGTT
    TTGGAAGAAA GAGCATGATT GGGGTTGGAA GAAATTTATT GAGTTACCTA
    AATTGAAGGA AGGGTTTATA GATGATTCTG GTTGTCTTAC AATTAAAGCT
    CAAGTGCAGG TGATCAGAGA GAGAGTGGAC CGACCTTTTC GCTGCCTTCA
    TTATAAATAT AGGGAGGAAC TTGTTAGGGT GTATTTGGGA AATGTAGAGC
    AAATTTGCTG GCGGTTTGTG GAAGAGAAAA GAAGCAAGCT TGGTAGGTTG
    ATAGAGGACA AGGCAAAATG GAAAAGCTTC TGTGCTTTCT GGATGGGGTT
    GGACCAAAAT TCAAGGCGTC GAATGTCCCG AGAGAAAATG GATGTGATTC
    TAAAAATAGT TGTAAAACAC TTCTTTGTCG AGAAGGAAGT TACATCTACT
    TTGGTGATGG ATTCCTTGTA TAGTGGATTG AAGGCTCTTG AAGGCCAAAA
    TAAGAACAAG GAGAGTAGGC CGAGACTAAT GGATACTGAA GAATCCACAG
    CTCCAATTGT TAGCGTGGAC AAAGATTCGT TTGCATTAGT TGATGATGTG
    TTATTACTCT TAGAGAAGGC TGCTCTGGAG CCATTGCCTA AAAAAGAGGA
    AAAGAGTTCT CAAAACCGTA CGAAGGATGG GAATGCTGGA GAGGAATTCA
    GTAGAGAAGC CGTTGAGCGT GATGATAGGC GTTTAACTGA ATTGGGTAGA
    CGGACTGTGG AGATATTTGT TCTTGCACAT ATCTTCAGGT AATAAGGCAT
    AATTTTTCCT CTTTGTTTTT TTATTTGGTG CACCAGGCAT AATTTTGCCT
    TTGCTTTAAA ATTTCCATAC AAGTGAATCA TAAGCACATA ATTTGTTTAC
    AAGCTAAGAC ATGCGTGACG ATCTTATTCT GAAACCGCTG ATAGTGTTTA
    TTTTGTATTT CTGGTCTTCT GGTATTGTGT GTCTTTGTGT TCTTAGCTGT
    ACCTCATGTA TAGCACTGCA ATCTTTCTGA GAAATGCAGC AACAAAATTG
    AAGTTGCATA CCAAGAAGCT ATTGCATGGA AAAGGCAAGA AGAACTTATT
    CGTGAAGAAG AGGAAGCGTG GCTGGCAGAA AGCGAACAGA AGGGCAAAAG
    AGGAGCATCT GAAAAAGAGA AGAAATCTAA GAAGAAACAG GCGAAACAGA
    AAAAGAACAA AAACAAAGGA AAGGAAATGA GGAAAGAAGA CAAGGTGAGA
    ACCCAAACAG AAGAAAGGGA AATTGAGAAA GAGGAATGTG TGAGAGCGAT
    AGCAGAATCG TCAGCTGAAA AACCTGACAC ACTTGGAGAT GTCTCTGACG
    TGTCTGATTC AGTAGATAGT TCAGCTGAAA TACTTCAGCT TGATTCAGAA
    GATAGAGAGA GTAGTCCTGT TCATTGGGAA ATGGATGCCT CAGAGGTTCA
    TCCTCCTTCT GCAGGAGACA CTAGCAGAGG AAGAGGCAAT TCTTTTTCTA
    TACCTAATGG AGTTGCAGAA AGAAAGGGTC TGTCCACAAT GGATGATAGT
    TCTTCAACCT GTTCTAATGA CTCGATTCAA TCAGGGGTAG CCAATGGGTC
    ATACAAAGGG AATGTATTAA ATTGCCAAAG CCAAAAGTGG TTTAGCAATG
    GAAAAATACA ACCAGGAAAA GTATCTGATT CCAACAGTTT AGCCAGTGAA
    AAAGAGCATC AACCTTCAAG ACTTGCATCT GACCCTAAAA ATCAGAGCCA
    TTCTTCTGAT ATACGCAGAG TTGGTGAAGC TGACATAGTT ATCTCCCACA
    TTCAAAAACC AGAGAGCCCT AAGGAACGTA GTCCTGTTAG CAAGGATCCC
    AACATGATTC AGATGAAAGA GAAAAGTGCT GCGGTACTTT CCCCATCCAG
    AGCTGCTCCT TGGAATCCTC CGTCTCCAGT GCAAGCAAAA CCGGAGAAAA
    AGGGTGTTTC AAATGTAGAG GCGGTTCCAA ACAGGAAAGT CATATCTGTT
    AAATCACCTT CATCACATCA TGCATCACCA TCTCGTGAAG CTCAGTTGCA
    AACAGTGGGT CCTAGAGCTG ATATACAGAA AATCGCTTCT CCGAAACCTG
    TGGAACAACC AGCACCTCCT ATGTCAAGGC CTTTGAGTGC TCCTATAATC
    CCTCCAACGC AAGCTGCACC TGTAATATCT GCTGTTCAAA CCTCGACTGC
    GTCCCTTGCT CGTTCAATGA GCTCAACAGG GCGTTTAGGT TCACCGACAC
    ATAGCCAAGC TTACAATCCT CAATCCTACA AACATGCCAT AGTGGGTTCA
    TCTGGTTTCA CCCACCCAAG CTCTCAATCG AGTGGAACAA GCACATTGCC
    GCCTTATTCA CATCCGTCTC CTATCTCAGT ATCAAATCAG TCTGGTTTCC
    CTATCAATGT TGGCTCTTGG GATGTTTCTT CTGGTGGGCT ATTGTGGACC
    GGTGGTTCGA GTTCAACCAG AGATACAACA ACAACCATCA GCGGGAATCA
    CAAAACAAAC ACTTACAACG CACCCGTAGT AACTACCAGC ATCAGGCCTA
    CTAATGTTCA GATAGGGAGA ACGGCACAGA GTCTGATGAC CGATGAGTTC
    CCTCACCTTG ATATCATCAA TGATCTGCTT GCAGACGAAC ACGGTACAAT
    GGATAATAGC GTATACCGTG TACCACAACA GTTCAACAAC CAGTACTCAT
    ATCATGGCGG TGCGGATCTC GGGATCTCTA GCAGGTCTAG GAGTTACAGT
    GATGATGGAT TTCACCAGTC TTACGGTGAA TACATGCCAC ATTCTGCTTC
    TTCCTCGCCA TATGGTAATG GGCAAACACA ATCGCAATGG CAGATGGCAA
    ATATGGATTT CTCTTTACCG GCTATGAGGA ACCAAGACGA TGTATCAGCA
    TCAGCAACAG CTACTTACTC TTACTTTGAT TTAGATTCAT CAAACCCGAA
    TTTGTCTGGA ATCAACGGCT ATAGGGACTT CAGGCCATCG AACGGACACT
    GAGGTTTGGG TTTAAAGAGT GGCATTGCAT TGTAATGTTT ATTATATAAA
    GATGGAAAGC AAAAAACATT TGTGTAAAGA GAGTTTTCGT CCTCTTCGTT
    TCAAATGAAT CCTTTTTTCT CAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G43560.2 [+] show detail - TRAF-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MATH 24.38
    HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 2.7e-132
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 2.7e-132
    HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 5.6e-169
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 5.6e-169
    superfamily TRAF-like 1.1e-22
    HMMPfam MATH 1.4e-19
    HMMSmart MATH 2.4e-16

    See the detailed result >

    AT5G43560.2

    Model type
    Protein coding
    Short Description
    TRAF-like superfamily protein
    Computational Description
    TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR