F19845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19845

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19845

Determination of introduced cDNA(s)

  • RAFL06-83-E02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-E02 - Resource: pda03847

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-E02 - full reading 
    ACATGAAAAC TAAACACACG TACACAAGAA ACCCCAAAAC ATTTTGCCTA 
    GAAAGTTGTT TAAATTACCT CTTAAACCTT AAGAAATCAT ATCCAGAAAC 
    TCAATGGATC AACAAGGGAT GGTCAAGAAA AGACTAGCCG TTCTCGTCGG 
    CTGCAACTAC CCTAACACAA GGAACGAGCT TCACGGTTGC ATCAATGATG 
    TTCTAGCCAT GAAAGAAACT ATTTTGTCAC GTTTCGGATT CAAACAAGAC 
    GACATTGAGG TGCTAACGGA CGAGCCAGAA TCAAAGGTAA AGCCGACAGG 
    TGCCAACATC AAGGCTGCTC TACGTAGGAT GGTGGATAAA GCTCAAGCCG 
    GATCTGGAGA CATCTTGTTC TTCCACTACA GTGGCCATGG AACTCGTATT 
    CCTTCGGTTA AATCTGCTCA TCCTTTTAAA CAAGACGAAG CTATTGTTCC 
    TTGTGATTTC AATCTCATCA CAGATGTTGA TTTCCGAGAA TTGGTCAATC 
    AACTTCCTAA AGGAACAAGC TTTACCATGA TCTCTGATTC TTGCCATAGT 
    GGTGGTCTCA TCGACAAGGA GAAAGAACAG ATCGGACCCT CTTCGGTCTC 
    CAGCAACATA TCTCCGGCTA TTGAGACAAC GAACAAGACT ATAACATCAC 
    GTGCCTTGCC CTTCAAGGCA GTCCTTGACC ACTTGAGTTC TCTCACCGGA 
    ATTACAACTT CCGACATCGG CACACATCTA CTTGAGCTCT TTGGCCGCGA 
    TGCTGGTCTT AAGTTTCGGT TACCGGCAAT GGATCTAATG GATCTTTTGG 
    AGACTATGAC GGCCCGTGAA AAACACGTGG ACTCAGGGAT ATTGATGAGC 
    GGGTGTCAGG CGGATGAGAC GTCTGCTGAC GTCGGCGTTG GGAACGGGAA 
    AGCGTACGGA GCGTTTAGCA ACGCGATTCA AAGGGTGTTG AACGAAAATG 
    AAGGTGCCAT GAAGAACAAG CAACTAGTGA TGATGGCAAG GGATGTGCTT 
    GAGAGACTAG GGTTTCATCA ACACCCTTGT CTCTACTGCA GCGACCAGAA 
    CGCAGACGCG ACGTTCCTTT CTCAACCTTG AATTTTAAAC GTTTGCGTTG 
    TTTTCTTTTA TTTGTTTTAT CACGTTTGCC TTTGGGGTTG TTGTAAATTG 
    TTAACTGGTG GAATGTGTGT ATTTTCTATT CTCTGTGGTG TACTCTAAAA 
    GGAAAAAGGA CATATAAAAC TTGTTTAATA ACATTTATCT TTTTTAATGG 
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G04200.1 [+] show detail - metacaspase 9
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G04200.1

    Model type
    Protein coding
    Short Description
    metacaspase 9
    Computational Description
    metacaspase 9 (MC9); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 6 (TAIR:AT1G79320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR