F19927

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19927

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19927

Determination of introduced cDNA(s)

  • RAFL05-16-I03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-I03 - Resource: pda07357

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-I03 - full reading 
    GATGACATAC CAAAAGCAAT ACCAAATGCA AACACACCAC ATGCAGCAAC 
    AACAACTCCA TCACTTCGTC TTTGTCCACG GCTCATGTCA TGGAGCATGG 
    TGCTGGTTCA AACTAGCTGC AAAGCTCAAG CTCGATGGTC ACCGTGTGAC 
    AGCTATCGAC CTTGGTGGCT CCGGTGTCGA CACGAGGCAG CTCCATGAGG 
    TTCGTTTGGT GTCGGCGTAT CTAGAGCCTT TGATGAGTTT CATGGAGTCT 
    CTCCCTGAAA ACGAGAAAGT GGTTCTTGTT GGTCATAGCT ATGGTGGCAT 
    TGGAACTTCT CTTGCTATGG AAAGGTTTCC GACCAAAGTC TCTGTCGGAA 
    TCTTCCTCTC TGCTTACATG CCGCACCATG ACTCTCCTCC GGCGGTTTTG 
    ATTCAAGAGT ATTTTACGAG ACTACCAGAG GGTTTCGCTA TGGACTGTGA 
    GTTTACATTC GAGGAAGGAT TAGAACACCC ACCAAGTTCA GTTTTGTTCG 
    GTACTAGTTT CTTGAAGGAG AAGGCATATA GTAATTGCCA GTTAGAGGAT 
    CTAGAATTAG CCATGGCGTT GATGAAACCA AGCTGGTTAT ACACTAAGGA 
    AATGGGAGGT GAAGATCTGA TAACAAAGGA GAGGTATGGA TCTGGGAAGA 
    GAGTGTTTAT TGTCTGTGAA GGCGACAATG TGGTTCCAGA GGAGATTCAG 
    AAGTGGATGA TTAGTAACTA CGAGCCTCAC GAAGTTAAGC GGATTGAAGA 
    AGCTGGTCAC ATGGCTATGC TCACTAAGCC TCATGAACTT TCTCAACTGC 
    TACAAGAAAT AGCAGCGAAA TATAACTAAA TGTAAAATGA TGACACCTGT 
    GTATGATTTG GGCTCAGTTA CATCTATGAT ATGAATAAGA GAGTTTCAAT 
    AAAG

    Gene models with high sequence identity

    1. AT3G50440.1 [+] show detail - methyl esterase 10
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF53474 2.1e-55
    HMMPfam Alpha/beta hydrolase fold-1 0.0019
    HMMPanther PTHR10992 1.29999924468183e-15
    Gene3D G3DSA:3.40.50.1820 2.70001369379003e-81

    See the detailed result >

    AT3G50440.1

    Model type
    Protein coding
    Short Description
    methyl esterase 10
    Curator Summary
    Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.
    Computational Description
    methyl esterase 10 (MES10); CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 1 (TAIR:AT2G23620.1); Has 1602 Blast hits to 1600 proteins in 360 species: Archae - 4; Bacteria - 838; Metazoa - 1; Fungi - 25; Plants - 612; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR