F19929

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19929

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19929

Determination of introduced cDNA(s)

  • RAFL05-19-C11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-C11 - Resource: pda02776

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-C11 - full reading
    TTACACGTCT ATCTTTCTTT CCTTTGTATA CCAAAAAATA TAAAATAAAA 
    AACACTATGG CGGAAAACTA CGACCGTGCC AGTGAGTTAA AAGCATTCGA
    CGAGATGAAG ATTGGCGTGA AAGGACTCGT CGACGCCGGA GTCACAAAAG
    TCCCGCGCAT TTTCCATAAC CCGCATGTTA ACGTAGCAAA CCCTAAGCCT
    ACATCGACGG TGGTGATGAT TCCAACAATC GATCTAGGTG GCGTGTTCGA
    ATCCACGGTC GTGCGAGAGA GTGTAGTTGC GAAGGTTAAA GACGCAATGG
    AGAAGTTTGG ATTTTTCCAG GCGATTAACC ATGGGGTTCC ACTTGATGTG
    ATGGAGAAGA TGATAAATGG TATTCGTCGG TTTCACGACC AAGATCCAGA
    AGTGAGGAAA ATGTTCTATA CCCGAGACAA AACCAAAAAG CTTAAATATC
    ACTCTAATGC TGATCTCTAT GAGTCTCCTG CTGCGAGTTG GAGAGATACC
    TTAAGTTGTG TCATGGCTCC TGATGTTCCA AAAGCACAGG ACTTACCTGA
    GGTTTGTGGG GAGATCATGT TGGAGTACTC AAAGGAAGTG ATGAAGTTAG
    CGGAGTTAAT GTTTGAAATT TTATCAGAAG CTTTAGGGTT GAGTCCTAAC
    CACCTCAAAG AAATGGATTG CGCAAAAGGT TTATGGATGC TCTGTCATTG
    TTTTCCACCC TGTCCTGAGC CAAACCGAAC ATTCGGCGGC GCTCAGCACA
    CAGACAGATC TTTCCTTACT ATTCTTCTTA ACGACAACAA TGGAGGACTT
    CAAGTTCTCT ACGATGGATA CTGGATCGAT GTTCCTCCTA ATCCCGAAGC
    ACTTATCTTT AACGTAGGAG ATTTCCTCCA GCTTATCTCG AATGACAAGT
    TTGTAAGCAT GGAGCATAGA ATTTTGGCAA ATGGAGGTGA AGAGCCGCGC
    ATTTCGGTCG CTTGTTTCTT TGTGCATACT TTTACTTCAC CAAGTTCGAG
    AGTATATGGA CCCATTAAAG AGCTTCTGTC TGAGCTAAAC CCTCCAAAAT
    ACAGAGACAC CACCTCGGAA TCCTCCAATC ACTATGTGGC TAGAAAACCT
    AATGGGAATT CTTCGTTGGA CCATTTAAGG ATCTGAAACT TGAACCTATA
    TCTCAGAGGT TTTCTTGAGT TTCCAATAAA ATTTGGTGCA CGCTGTGACG
    TACCATGTTC AAGACCTTGA ACGTATCATT CAATAATTCT TCCGTTGTGA
    GTTTCGGCTG CATGTTTGAC CCAAACCAGA GAGAGTATGG ATCAATCAAG
    GAGAGTGAAC CTAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT2G25450.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 8.1e-174
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 8.1e-174
    Gene3D no description 2.6e-85
    superfamily Clavaminate synthase-like 2.9e-82
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.7e-20

    See the detailed result >

    AT2G25450.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Curator Summary
    encodes a protein whose sequence is similar to ACC oxidase
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30830.1); Has 7865 Blast hits to 7837 proteins in 966 species: Archae - 0; Bacteria - 1060; Metazoa - 82; Fungi - 676; Plants - 4824; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR