F19943

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19943

Determination of introduced cDNA(s)

  • RAFL09-90-B17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-90-B17 - Resource: pda08993

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-90-B17 - full reading 
    ATCATCCAAC ATGGCATCAT CATCAATCCT CATCCCTCCG ATTCTCACCC 
    GTCGTAATCT CCTCCTCTCC ACCACAATCG CCACCGTAAC TCCACCACCA 
    CCAGCTAAAC CACCTTCCCC CGACATCACA ATAACCGATC GAGTCTTCCT 
    CGACTTCTCC CTCTGCCCCA CCTACTTCCG CTCAGATCCC TCCGCGACAC 
    TCTCCTCCAC CACACCTTGC TCCGATTCAA CTCCTCTCGG CCGCGTCGTT 
    CTCGGATTAT ACGGCCGTCA CGTTCCCATA ACCGTCTCAA CTTTCAAACG 
    TATGTGTACT TCATCTTCCA CATCTTACAA AAACACACCT GTCCACAAAA 
    TCTTCCCTGG TCAGTATTTT CTCGCCGGAA GACAAGGAGG AGGACGGCGA 
    GATACGGCGG AGGTTGGTTA TTCACTCAGA GACTTACCTC GTAACACCGA 
    CGTTGTTAAT TCCAAAGCTT TTTTACTTCC TCATGCTCGT GCTGGTGTTG 
    TTTCTCTTTG TTTATCTGAG AATGATGATG ATGATGATAT TAGACTCGAT 
    CCTGATTATA GAAATGTTGA ATTCTTAATC ACTACTGGTC CTGGACCGTC 
    TCCGCAGCTC GATGGCGGTA ACATTGTATT CGGAACTGTT CTTGAAGGAT 
    TAGATGTAGT GACGAGTATT TCTTCGATTC CGACGTATAA GCCGTCGGAG 
    AATATTAAAC AGTTTAACGA TTTTGCGGAG TTTCTTGGAG ACGAGAGAGC 
    TCAAAACGCG AGATCTTTGT GGAATAGACC TTTGAAGACG GTTTTCATTA 
    GTGGCTGTGG AGAGCTTAAG GTCACTAATC CTTCACTCTC TCCAACTTTG 
    CCTTAATTAT CGTATCTTCG TATATATATA TATGTGTGTG TGTCAAATCT 
    TGTTTATAAT CATGCTTCTG CTTCTTCTAC TATATGAAAA TGAAATTGTA 
    ATTTAATCCT ACTCTGGTGG TTGCTAAAGA TTAGTATAGA GAAGAGCTTA 
    TATAATCATA ACATTGAGGT TGTTGTTGTT TGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G35100.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.09999977126231e-18
    superfamily Cyclophilin-like 1.3e-24
    HMMPanther PPIase_cyclophilin 0
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.69999663390112e-05
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9.69999663390112e-05
    HMMPanther PTHR11071:SF11 0
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 0
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.1e-17

    See the detailed result >

    AT5G35100.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G34960.1); Has 4654 Blast hits to 4654 proteins in 798 species: Archae - 9; Bacteria - 741; Metazoa - 1669; Fungi - 839; Plants - 784; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR