F19946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19946

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19946

Determination of introduced cDNA(s)

  • RAFL09-06-O11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-O11 - Resource: pda05124

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-O11 - full reading
    AGGTACAAGA GCCTTACAAA ATTCTTCTGG TTCTCTGAGG ATCAAACCAC 
    CACAAGTCAG AACAGAGTGA GGTAATCATT ACCAACAAAA AATGGCGGCT
    TTATCATCCT CCTCTCTGTT TTTCTCTTCC AAGACAACTT CTCCGATCAG
    CAATCTCCTG ATCCCGCCAT CTCTCCACCG CTTCTCTCTA CCCTCTTCAT
    CTTCCTCCTT TTCCTCTCTC TCTTCTTCTT CTTCTTCTTC TTCTTCTCTC
    TTGACATTCT CTCTGAGGAC TTCTCGAAGG TTATCTCCTC AAAAATTTAC
    CGTTAAGGCC AGCTCCGTCG GTGAGAAGAA GAATGTACTT ATAGTCAACA
    CCAACAGTGG CGGTCACGCC GTGATCGGGT TTTACTTCGC CAAAGAGCTT
    CTCTCCGCCG GCCACGCCGT CACCATCTTG ACCGTCGGCG ATGAATCTTC
    CGAAAAGATG AAGAAACCTC CTTTCAACCG ATTCTCCGAA ATTGTTAGCG
    GCGGAGGAAA GACGGTGTGG GGGAACCCGG CCAATGTTGC CAATGTGGTC
    GGAGGTGAAA CATTTGACGT TGTCCTTGAC AACAATGGCA AGGATTTGGA
    TACTGTTAGG CCAGTGGTGG ATTGGGCTAA AAGCTCCGGC GTCAAGCAAT
    TCTTGTTCAT AAGTAGCGCC GGGATCTACA AGTCCACCGA ACAACCTCCT
    CACGTTGAAG GGGACGCAGT TAAAGCCGAC GCTGGTCACG TGGTGGTGGA
    GAAGTACTTA GCCGAAACAT TCGGGAACTG GGCCTCCTTT CGACCGCAGT
    ACATGATCGG CTCTGGCAAC AACAAAGACT GCGAAGAATG GTTCTTCGAC
    CGGATTGTGA GGGACAGAGC AGTGCCAATC CCAGGATCAG GATTGCAGCT
    AACCAACATA TCCCACGTGA GGGACTTGTC TTCCATGCTT ACTTCTGCCG
    TTGCCAACCC AGAGGCTGCT TCCGGCAACA TCTTCAACTG CGTTAGCGAC
    AGAGCCGTTA CTCTTGACGG TATGGCCAAG CTCTGTGCTG CCGCTGCTGG
    CAAAACTGTT GAGATCGTTC ATTATGACCC TAAAGCCATT GGGGTTGACG
    CCAAGAAGGC TTTTCTATTC AGAAACATGC ATTTCTACGC AGAGCCAAGA
    GCCGCTAAGG ACTTATTAGG GTGGGAGAGT AAAACGAATC TGCCTGAAGA
    TCTCAAGGAG AGATTCGAAG AGTATGTGAA GATTGGCAGA GACAAGAAAG
    AGATTAAGTT TGAGTTAGAC GATAAGATAC TCGAAGCCCT CAAAACTCCA
    GTGGCCGCTT GATCAAATAC GCCATAAAGT TTGTTCTTCA TTTGTAACTT
    CTTATGCTAC ACTGTGCTCT TTCATTTCCC ACGGCTCATA TGAGATGAAC
    ATGATTTCAG CTAAAAGATC ATTTAAATAT C

    Gene models with high sequence identity

    1. AT3G63140.1 [+] show detail - chloroplast stem-loop binding protein of 41 kDa
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 0.0000000034
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 4.8e-88
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 4.8e-88
    HMMPfam NAD-dependent epimerase/dehydratase 0.00000059
    superfamily NAD(P)-binding domain 3.1e-33
    Coil coiled-coil 0

    See the detailed result >

    AT3G63140.1

    Model type
    Protein coding
    Short Description
    chloroplast stem-loop binding protein of 41 kDa
    Curator Summary
    Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.
    Computational Description
    chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR