F19951

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19951

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19951

Determination of introduced cDNA(s)

RAFL09-23-M17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-M17 - Resource: pda08055

full reading [+] show sequence

GAACAATTCA TTCTTCTGGG TGTGTTGTGT TTGAGTTTTT GGATCATACG 
AAGAAGAAAT CGGCGGGAGA AGCTATGTCG AGGCTATGGG CGAGATTTGC 
GGGATTGTTC AGTAGCAAGA GTTTTATCGG AGTAGACAAG ACTGGTAACA 
AGTACTTTTC CAGAATGGAG GAGATTGACG GATTCGTGAA GGAGAAAAGA 
TGGGTCAAGT TTAGACGAGA GGAGGACCCA ACCTCTATTC CTGTTGAATG 
GATTTGTTGG CTGAATGGGC AGCGAAAAAG GGCTCCTACT CCTGAGGAAA 
TGATTGAACT TGAAGCAAGG CGTGAGCGTG TAAAGCTTAA TGTTGCTCTT 
CTCAAGAAGG AAGAGGAGGA GAAGAAAGCC AGAGTAGGCA CCGGACGCAA 
AATCACCATT GGTAAAGTTG ATGGTCCAGA TTTGACAAGC TTTGTTCGCC 
AATTTCCACC AGATTCAAAA GGTGGTGAAC CAGAGGAAGC TAGTGAAGAA 
GCAGATAAAT CAAGGGCCAA GGAACATGAA CCCGAGATAG TTTCTGCAGA 
ACCACCCGAA CCAAAGACAA CAGAGCCATC AGGATCTGGA TCATCATTTA 
GGCCCGGGAC ATGGCAGCCA CCATCCTAAA CACATCTCTC TTCACGCAGA 
TGACAAACCA ACATACTATT CAATTATTTT GTTTGTTGTA CTCTACACAA 
CCGATTGGTT TGAGCCTTAC AGATGAGCCA TAAGACCAGA GAGCTTTTCA 
AGACCCTAAA ATTGTGTCCT TTCACGCTGT CATTGAGGAC TTAGAAGAGT 
CAAAATGAGA AGCCATCTTC TTATACTTTG TTTTGTTTAG GGTGTTTGTC 
TCTTGGCATA ATGCTTGAGA CTTTTAGCCT GCCTTGTCCT TCATAGCTGA 
AGAGGAGCCT AGCTACCTTT TGTTTCTCTT CGTTGACTTG AATAAAACAG 
TTTGATTGAA TAACAGTTAT TCATTTTCAT GTCATAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

AT4G26965.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	0.00027
Coil	coiled-coil	0
HMMPfam	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	2.9e-13

See the detailed result >

AT4G26965.1

Model type: Protein coding
Short Description: NADH:ubiquinone oxidoreductase, 17.2kDa subunit
Computational Description: NADH:ubiquinone oxidoreductase, 17.2kDa subunit; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 317 Blast hits to 317 proteins in 96 species: Archae - 0; Bacteria - 24; Metazoa - 85; Fungi - 52; Plants - 37; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link: InterPro Scan - TAIR