F20017

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20017

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20017

Determination of introduced cDNA(s)

  • RAFL06-85-A04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-85-A04 - Resource: pda07736

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-85-A04 - full reading
    GATTCCTTCT TTTGTTTTAA ACTTCTTTTT GATTCTTTCT ATATATACAA 
    ATACAAAATC TCCTCTTCTT CTTGAAAAAG CTCTTTACGT TTCTCTCTCT
    CTCTCTAATT GCCTGCTATG ATGCAAGAAT TAGGCTTACA ACGTTTCTCA
    AACGACGTCG TTCGCTTAGA CCTCACTCCT CCTTCTCAAA CCTCATCTAC
    TTCTCTTTCC ATCGACGAAG AGGAATCAAC GGAAGCCAAG ATCCGACGGC
    TGATATCGGA GCATCCTGTG ATCATCTTCA GTAGATCTTC ATGTTGCATG
    TGCCACGTCA TGAAGAGACT CTTAGCAACG ATCGGCGTAA TCCCCACCGT
    CATCGAGCTC GATGATCACG AGGTTTCCTC TCTTCCCACG GCTCTACAAG
    ATGAATATTC CGGTGGCGTC TCCGTCGTTG GTCCTCCGCC GGCGGTTTTC
    ATTGGCCGTG AGTGCGTCGG AGGTCTTGAG TCCCTTGTCG CTCTTCACTT
    AAGTGGTCAA CTTGTTCCTA AGCTTGTCCA AGTTGGAGCT CTTTGGGTAT
    GATTGTAATT TTCATCGTCT TCTTACTTGT GTTAAAATCA ATAGGCTTTT
    GCAGTATCAA AAGAAAACAA AAATTAGGGT TTCACTTCAA TTGGTCATGA
    AAGCCAAATT CTGATTATCA TCAGATGATC ATAATTAAAC ACCCATGTAG
    AAAATGAATT ATGAATAATT AAAGATGTGT AATTAGTAAA TTTTATACGA
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT4G33040.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 1.2e-18
    HMMTigr Glutaredoxin-like, plant II 9.8e-44
    Gene3D Thioredoxin fold 4.8e-19
    HMMPfam Glutaredoxin 0.00000006
    HMMPanther GLUTAREDOXIN, GRX 1.9e-64
    HMMPanther GLUTAREDOXIN 1.9e-64
    ProfileScan Glutaredoxin 19.908

    See the detailed result >

    AT4G33040.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Computational Description
    Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G11930.1); Has 1149 Blast hits to 1147 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 257; Fungi - 124; Plants - 712; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR