F20024

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20024

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20024

Determination of introduced cDNA(s)

  • RAFL09-07-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-D04 - Resource: pda05145

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-D04 - full reading 
    GCGGTGGTGA GAAACAATGG TGAAGTTTCT GAAGCAGAAC AAAGCGGTGA 
    TCCTCCTTCA AGGCCGTTAC GCCGGCAAAA AGGCAGTGAT CATCAAATCC 
    TTCGATGACG GAACCAGTGA CCGTCGTTAC GGACACTGCC TCGTCGCCGG 
    ACTGAAGAAG TACCCGAGCA AAGTCATCCG CAAAGACTCA GCGAAGAAGA 
    CGGCGAAGAA ATCAAGAGTG AAATGTTTCA TCAAGCTCGT GAATTACCAG 
    CATCTGATGC CTACACGTTA CACGCTCGAT GTAGATCTGA AGGAAGTAGC 
    GACTCTTGAT GCTCTTAAGA GTAAGGATAA GAAGGTGACT GCTTTAAAGG 
    AAGCTAAGGC TAAGCTTGAG GAACGTTTCA AGACTGGGAA GAACAGGTGG 
    TTCTTTACTA AGCTCAGGTT CTGAAGAAGA ACCTTTGAGA TTTTTATCTA 
    TCTATCTACT TTTTGTTTAG TTCTAGAATG AATTTGGATC ATTGTTTAAG 
    ACCTTTTGGT TTGGAATTGA TTCTGGATTT TGTCTCTTAC TTATAATCTT 
    TTGCTATATT GATGCCC

    Gene models with high sequence identity

    1. AT3G22230.1 [+] show detail - Ribosomal L27e protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L27e, conserved site 0
    HMMPanther Ribosomal protein L27e 7.4e-79
    BlastProDom Ribosomal protein L27e 4e-37
    HMMPfam Ribosomal protein L27e 8.8e-33
    Coil coiled-coil 0

    See the detailed result >

    AT3G22230.1

    Model type
    Protein coding
    Short Description
    Ribosomal L27e protein family
    Computational Description
    Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT4G15000.1); Has 765 Blast hits to 765 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR