F20126

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20126

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20126

Determination of introduced cDNA(s)

  • RAFL04-20-M20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-M20 - Resource: pda00736

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-M20 - full reading 
    AACCCAAATC GAAGCATTTC AGGGTCACCA CAAGTGGCCT TGGACAATCA 
    CCAGACGGCA ATTTGCCAAC AATCTACACG CTCTGGCTCA AGTCATAACC 
    TTCACAGTTC TTCCACTAGA CCTTGCATTT AACGACCCTG TGTTTCACGG 
    CTTTGTGTGC ACATTTGCAT TTTGCATATT GTTTAGCCAG CAATTCCATG 
    CTTGGGCACA TGGAACCAAG AGCAAGCTTC CACCTCTCGT GGTCGCGTTG 
    CAGGACATGG GGTTACTTGT TTCACGGAGA CAGCATGCGG AACATCATCG 
    AGCACCGTAT AACAACAATT ACTGCATCGT GAGTGGAGCA TGGAACAATG 
    TTCTGGATGA GAGTAAGGTC TTTGAGGCAT TGGAGATGGT GTTTTATTTC 
    CAGCTTGGGG TGAGACCTAG GTCATGGAGT GAGCCAAACT CTGACTGGAT 
    AGAAGAAACC GAAATCTCCA ACAACCAAGC ATAAATATTT TTTTTACAGA 
    GTGATACATG TACAAGAAAA TTTCAGTAAT ATACTGAAAA GATTTCTTCG 
    TAATTTATAT GTAACGAGTG TGACTGTATT TAATACTGTA TAAAACAAGC 
    AAAACAACTG AGCATGTACC ATTTAAGTAT CG

    Gene models with high sequence identity

    1. AT4G27030.1 [+] show detail - fatty acid desaturase A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G27030.1

    Model type
    Protein coding
    Short Description
    fatty acid desaturase A
    Curator Summary
    Encodes an unusual palmitate desaturase that is highly substrate specific. It introduces a delta-3 trans double bond at palmitate at the sn-2 position of phosphatidylglycerol.
    Computational Description
    fatty acid desaturase A (FADA); FUNCTIONS IN: Delta 3-trans hexadecenoic acid phosphatidylglycerol desaturase activity; INVOLVED IN: response to karrikin, phosphatidylglycerol metabolic process, unsaturated fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kua-ubiquitin conjugating enzyme hybrid, localisation (InterPro:IPR019547); BEST Arabidopsis thaliana protein match is: Kua-ubiquitin conjugating enzyme hybrid localisation domain (TAIR:AT1G62190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR