F20128

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20128

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20128

Determination of introduced cDNA(s)

  • RAFL02-05-J08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-05-J08 - Resource: pda02233

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-05-J08 - full reading
    GTAGATCTAT TTCCGCATCT GCTTAAACAC CTACATCGTC GTAGATCGCA 
    AACCATGGCC GTCGCTGTAG CTAAGCTTCT GATCTCCGCC ATGGCGGTTT
    TCATGCTTGT TTCTGCTTCG TTCGCGACCT CGGAAGTGCC GTTCATGGTG
    GTTCACAAGA AAGCCACTCT CAACAGGCTC AAATCTGGCG CCGAACGCGT
    CTCCGTTTCC TACGACATCT ATAACCAAGG ATCCTCGTCG GCGTATGATG
    TGACTCTGAC AGATAATAGC TGGGATAAAA AGACTTTTGA AGTTGTTAAT
    GGAAACACTT CAAAATCATG GGAAAGACTT GATGCAGGAG GTATTCTGTC
    TCATTCTATC GAATTGGAGG CCAAGGTTAA AGGAGTCTTC TACGGTGCTC
    CTGCTGTCGT TACTTTCCGC ATCCCCACTA AGCCAGCTCT TCAGGAAGCA
    TACTCAACTC CACTACTACC TCTAGATATC CTCGCAGACA AACCTCCAAC
    GAAACCTTTG GACGTGGCCA AGAGGTTGCT GGCGAAATAT GGATCACTCG
    TCTCCGTGAT CTCCATGGTG GTTTGTTTCA TATACTTGGT GGCAACACCT
    AAGTCCAACG TATCAAAGGC AAGCAGCAAG AAGAAGCGTT AAGTTAGTGA
    AATGAAAGGT GAGAAAGGTT GGTACGGTGC TGTTTTCTGT TTAACAGTTA
    AACACAGTTT CAAAACTTGT AAGAATTAGA GAACACACTT TAATTTTGGT
    GTTGCAGAGG ACATACTTCA AGTTCAAAGA GTTATTTTGG TTTTACTTAA
    AAAAAAAAAA AAAAAAAAAA AAAG

    Gene models with high sequence identity

    1. AT5G14030.1 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translocon-associated beta 5.3e-95
    HMMPfam Translocon-associated beta 3.6e-58

    See the detailed result >

    AT5G14030.1

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR