F20134

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20134

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20134

Determination of introduced cDNA(s)

RAFL06-07-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-H09 - Resource: pda07503

full reading [+] show sequence

ATCTTCTCCA CCAGAATTTG TTTTAGGCTC TCCTTCTTCT GTTTCTTTTT 
CTCCCAAAGA AACAATTAGA TATGGAGAAC CTTACCCTAG TTTCTTGCTC 
AGCTTCTTCT CCAAAGCTGT TAATTGGATG CAATTTCACT TCCTCGCTGA 
AAAACCCTAC TGGGTTTTCT CGTCGGACTC CTAATATTGT CCTCCGGTGT 
TCCAAAATAT CTGCCTCTGC TCAATCTCAA TCTCCCTCTT CGCGTCCGGA 
GAACACTGGA GAAATCGTGG TTGTGAAACA GAGAAGCAAA GCTTTTGCAA 
GTATATTTTC TTCGAGTCGT GATCAACAGA CAACTTCTGT TGCTTCCCCT 
AGTGTGCCTG TGCCACCACC ATCTTCATCA ACCATAGGAT CACCACTTTT 
CTGGATTGGT GTTGGTGTTG GTCTATCAGC TTTGTTCTCA TATGTAACTT 
CAAATTTAAA GAAATATGCA ATGCAAACAG CTATGAAGAC GATGATGAAC 
CAAATGAATA CGCAAAATAG CCAGTTTAAT AATTCTGGAT TCCCATCAGG 
ATCACCTTTT CCGTTTCCAT TTCCTCCTCA AACAAGTCCT GCTTCCTCGC 
CATTCCAATC TCAATCCCAG TCTTCAGGTG CTACCGTTGA TGTGACAGCG 
ACAAAAGTAG AGACACCTCC TTCAACTAAA CCGAAACCTA CACCTGCAAA 
GGATATAGAG GTGGATAAGC CAAGTGTTGT CTTAGAGGCA AGCAAAGAGA 
AGAAAGAAGA AAAGAACTAT GCCTTTGAAG ACATTTCACC CGAGGAAACC 
ACAAAAGAAA GCCCATTTAG CAACTATGCA GAAGTCTCTG AAACTAATTC 
CCCCAAAGAA ACTCGCTTGT TTGAGGATGT CTTGCAAAAT GGAGCTGGTC 
CGGCAAATGG TGCCACTGCT TCAGAGGTTT TTCAATCTTT GGGTGGTGGG 
AAAGGAGGGC CGGGTTTATC TGTAGAAGCT TTAGAGAAAA TGATGGAAGA 
TCCAACAGTC CAGAAGATGG TTTACCCATA CTTGCCTGAG GAGATGAGGA 
ACCCAGAAAC TTTCAAATGG ATGCTTAAAA ATCCTCAGTA CCGTCAACAA 
CTACAGGACA TGTTGAATAA TATGAGTGGG AGTGGTGAAT GGGACAAGCG 
AATGACAGAT ACATTGAAGA ATTTTGACCT GAATAGTCCT GAAGTGAAGC 
AACAATTCAA TCAAATAGGA CTAACTCCAG AAGAAGTCAT ATCTAAGATC 
ATGGAGAACC CTGATGTTGC CATGGCATTC CAGAATCCTA GAGTCCAAGC 
AGCGTTAATG GAATGCTCAG AGAACCCAAT GAACATCATG AAGTACCAAA 
ACGACAAAGA GGTAATGGAT GTGTTCAACA AGATATCGCA GCTCTTCCCA 
GGAATGACGG GTTGAAAAAG CTCACGTCTT TGGTTCTATC AAAAATGTCA 
CATTGTCTTT AGCTTTTTGT AGGGAGAAAA AAATGTTTTT TTTTTTTTGC 
AAAGAGTCTT CAGTTTTGGT CAGATCAGAG AATTGTGTAC CATGTTAATC 
TTAAACGCGG TCGGGAATTG GAGTCGTGTG AAAACGCCGC TGCTGTTGTT 
TGGTATGAAT ATTATACAAT AGAATTTGTT GTCTTAC

Gene models with high sequence identity

AT5G16620.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
E-value: 0; Score: 99.88

InterPro Scan Digest

Program	Description	E-value
HMMPanther	HSC70-INTERACTING PROTEIN	0.0000000000012
HMMPanther	TPR REPEAT CONTAINING PROTEIN	0.0000000000012
HMMPfam	26S proteasome complex ubiquitin receptor, subunit Rpn13	0.00000082
HMMSmart	Heat shock chaperonin-binding	0.0017
HMMSmart	Heat shock chaperonin-binding	0.000000034

See the detailed result >

AT5G16620.1

Model type: Protein coding
Short Description: hydroxyproline-rich glycoprotein family protein
Curator Summary: chloroplast protein import (Tic40)
Computational Description: TIC40; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR