F20201

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F20201

Determination of introduced cDNA(s)

  • RAFL07-13-F20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-13-F20 - Resource: pda04211

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-13-F20 - full reading 
    ACACCAAAAT CCATTAACAC ACACAAAAAC AAAATGAAAT TTTCAATCAC 
    ATTAGCTCTA TGCTTCACTC TCTCCATCTT CTTGATCGGA TCACAAGCCA 
    AAGTTCCAGT CGACGACCAA TTCCGAGTGG TCAACGAAGG TGGCTACACC 
    GATTACAGTC CCATCGAATA CAACCCCGAC GTACGTGGCT TCGTACCCTT 
    CAGTGACAAC TTCCGTCTCT GTTTCTACAA CACAACCCCA AACGCATACA 
    CTCTCGCTCT CAGAATCGGA AACAGAGTCC AAGAATCCAC TCTCAGATGG 
    GTCTGGGAAG CAAACAGAGG CTCACCGGTC AAAGAAAACG CGACGTTGAC 
    TTTTGGCGAA GACGGAAACC TCGTACTCGC TGAAGCCGAT GGACGCTTGG 
    TATGGCAAAC GAACACAGCT AACAAAGGCG CCGTGGGGAT CAAAATCTTG 
    GAGAATGGCA ATATGGTAAT ATACGATTCC AGTGGAAAAT TTGTATGGCA 
    GAGCTTTGAT TCTCCCACCG ACACACTTCT CGTTGGACAG TCTTTGAAAC 
    TCAACGGTCG GACCAAACTC GTAAGCAGAC TGTCTCCATC TGTCAACACA 
    AACGGACCGT ACAGTCTCGT GATGGAAGCC AAGAAGCTAG TCTTGTACTA 
    CACGACAAAC AAAACTCCGA AACCAATCGC TTATTTTGAA TACGAATTCT 
    TCACCAAGAT AACACAATTC CAGTCAATGA CGTTCCAAGC TGTGGAAGAT 
    TCCGACACAA CGTGGGGTCT AGTCATGGAA GGTGTCGATT CTGGTTCTAA 
    ATTCAACGTT TCAACGTTCC TCTCACGGCC GAAACACAAC GCGACGTTGA 
    GTTTTATTCG GTTAGAATCA GACGGAAACA TCAGAGTTTG GAGTTACAGT 
    ACGTTGGCGA CTTCCACGGC TTGGGACGTG ACATACACGG CGTTTACCAA 
    CGCCGACACT GACGGTAACG ACGAGTGTAG GATCCCTGAG CATTGTTTGG 
    GGTTTGGTTT GTGTAAGAAA GGCCAGTGTA ACGCTTGTCC TAGCGACAAA 
    GGGCTTCTTG GTTGGGACGA GACATGTAAA TCTCCAAGTC TCGCAAGTTG 
    CGATCCCAAG ACATTTCACT ACTTCAAGAT CGAAGGAGCT GATAGTTTCA 
    TGACAAAATA TAACGGTGGA TCATCGACGA CGGAGAGTGC GTGTGGGGAC 
    AAGTGTACGA GAGATTGCAA ATGTTTAGGG TTTTTCTACA ATAGAAAGAG 
    TTCGAGGTGT TGGTTGGGCT ACGAGCTCAA GACATTGACT AGAACCGGAG 
    ATTCTTCCCT GGTTGCTTAT GTCAAAGCTC CTAATGCAAA CAAAAAGTCA 
    ACTCTTTGAG GTCTGAAAGT CATATATATA TATGAAATTA TTGTGTTGTG 
    TGTTTAATAA GGTTCGTTTG TGTACCTTTT TAAAAATAAA TGGTGTACTG 
    ATTCTCAAGA TAAATCCTAA TACAAAGTGA AGTGAAAG

    Gene models with high sequence identity

    1. AT1G78850.1 [+] show detail - D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6.9e-06
    superfamily Curculin-like (mannose-binding) lectin 1.9e-33
    ProfileScan Curculin-like (mannose-binding) lectin 15.075
    ProfileScan Apple-like 7.388
    HMMPfam Curculin-like (mannose-binding) lectin 2.3e-27
    HMMSmart Curculin-like (mannose-binding) lectin 5.9e-27

    See the detailed result >

    AT1G78850.1

    Model type
    Protein coding
    Short Description
    D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
    Curator Summary
    curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein
    Computational Description
    D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: phloem, stem, guard cell, cultured cell, callus; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78860.1); Has 2743 Blast hits to 2677 proteins in 112 species: Archae - 0; Bacteria - 63; Metazoa - 5; Fungi - 0; Plants - 2661; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR