F20232

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20232

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20232

Determination of introduced cDNA(s)

  • RAFL09-07-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-E15 - Resource: pda09629

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-E15 - full reading
    AAAAAAAACA CAAACATCAC ATGTATACAC ACATATAGTT ACAAACACAC 
    ATACACAAAA CACAGATATA TAAAAATGTC TTGTTATAAT AAAGCACTAT
    TGATCGGCAA CAAAGTCGTC GTTATACTTG TATTCCTCTT ATGTTTGGTT
    CACTCGTCAG AGTCACTTCG ACCACTGTTT GCATGTGATC CAGCAAACGG
    GTTAACCCGG ACGCTCCGGT TCTGTCGGGC CAATGTACCG ATCCATGTGA
    GAGTTCAAGA TTTGCTCGGA AGGCTCACGT TGCAGGAGAA GATCCGCAAC
    CTCGTCAACA ATGCTGCCGC CGTACCACGT CTCGGTATTG GAGGCTATGA
    GTGGTGGTCC GAGGCTCTCC ACGGCATTTC CGACGTTGGT CCAGGCGCTA
    AGTTCGGTGG TGCTTTTCCC GGTGCCACCA GCTTCCCTCA GGTCATCACC
    ACCGCAGCTT CTTTCAACCA GTCTCTATGG GAAGAGATCG GACGGGTGGT
    GTCTGATGAG GCAAGAGCTA TGTACAATGG TGGCGTGGCC GGTCTGACAT
    ATTGGAGTCC GAATGTGAAT ATCTTGAGGG ACCCGCGGTG GGGCCGAGGC
    CAAGAAACTC CCGGAGAAGA TCCTATCGTT GCCGCAAAAT ATGCCGCCAG
    CTACGTCCGG GGACTTCAGG GTACTGCTGC CGGTAACCGC CTTAAAGTCG
    CCGCATGTTG CAAACATTAC ACTGCTTATG ATCTTGATAA TTGGAATGGC
    GTCGACCGTT TCCACTTCAA CGCTAAGGTC ACCCAACAAG ATTTAGAGGA
    CACATACAAC GTGCCATTCA AATCATGTGT TTACGAAGGA AAAGTAGCGA
    GTGTAATGTG TTCGTACAAC CAAGTCAATG GAAAGCCCAC ATGTGCTGAT
    GAAAATCTCT TAAAGAACAC TATTCGTGGT CAATGGCGTC TCAATGGGTA
    CATTGTCTCA GATTGTGACT CTGTTGATGT TTTCTTCAAC CAACAACATT
    ACACTAGCAC TCCGGAAGAA GCCGCCGCCA GATCCATTAA AGCCGGTTTG
    GACTTGGACT GCGGGCCGTT TTTGGCGATT TTCACGGAAG GTGCAGTGAA
    GAAAGGATTG TTAACGGAGA ATGACATCAA TTTAGCACTT GCTAATACAT
    TAACAGTCCA AATGAGACTT GGTATGTTTG ATGGTAACCT TGGGCCGTAC
    GCTAATCTTG GGCCAAGAGA TGTTTGTACT CCGGCCCATA AACATTTAGC
    TCTTGAAGCA GCCCATCAAG GGATTGTTCT TCTCAAAAAC TCTGCTCGCT
    CTCTTCCACT CTCCCCCAGA CGCCACCGCA CCGTCGCCGT GATTGGTCCA
    AACTCCGACG TCACTGAGAC TATGATCGGC AACTATGCAG GGAAAGCATG
    CGCCTATACG TCGCCGTTGC AAGGGATTTC AAGATACGCG AGGACACTTC
    ACCAAGCTGG CTGTGCCGGC GTGGCTTGCA AAGGGAACCA AGGATTTGGT
    GCAGCGGAGG CAGCGGCGCG TGAAGCCGAC GCGACGGTTC TTGTGATGGG
    ATTAGATCAG TCGATAGAGG CAGAGACACG AGATCGAACC GGGCTTCTCT
    TACCGGGTTA TCAACAAGAC CTAGTGACCC GTGTAGCTCA AGCTTCTAGA
    GGTCCAGTCA TTTTGGTCCT TATGAGTGGT GGACCAATCG ATGTAACCTT
    CGCTAAGAAT GATCCTCGTG TTGCTGCCAT CATTTGGGCT GGGTATCCGG
    GTCAAGCGGG TGGAGCTGCC ATCGCCAATA TCATCTTTGG TGCTGCTAAT
    CCCGGAGGAA AACTACCAAT GACATGGTAT CCACAAGATT ACGTGGCCAA
    AGTGCCAATG ACGGTAATGG CCATGAGAGC ATCCGGTAAT TATCCAGGAA
    GGACATACAG ATTCTACAAA GGTCCAGTAG TATTTCCATT TGGGTTCGGT
    TTAAGTTACA CTACCTTCAC TCATAGTTTG GCCAAAAGCC CATTGGCCCA
    ACTATCAGTT TCACTCTCCA ATCTCAACTC TGCCAATACC ATTCTCAACT
    CTTCATCACA CTCCATCAAA GTGTCTCACA CCAACTGCAA TTCATTTCCG
    AAAATGCCCC TTCACGTCGA AGTATCAAAC ACAGGTGAAT TCGATGGAAC
    ACACACGGTG TTTGTATTTG CTGAGCCGCC GATAAACGGA ATAAAAGGAT
    TGGGTGTGAA CAAACAATTG ATAGCGTTCG AGAAGGTTCA TGTCATGGCA
    GGGGCAAAAC AGACCGTTCA AGTTGATGTT GATGCTTGCA AGCATCTTGG
    TGTAGTGGAT GAGTATGGAA AGAGGAGAAT CCCAATGGGT GAGCATAAGC
    TGCACATTGG TGACCTTAAA CATACTATTT TGGTCCAACC GCAACTTTGA
    CGGACGCATA AAAAAACCAA CAAATAAGGA AAGCATTTTA ACAAAGTGGA
    GTGTTTCCTC TTATTTATAT AATATAGAGA GATAGGTTTA TTTTCTTATG
    AAATTATTAC TCAAGAAAGT ATGAATTTGT AAAGAACCAC CAAAGGGTTG
    CTTCTTGGTT GTGTCTTTTT TCCTTTAATT TTTTTTTGGA C

    Gene models with high sequence identity

    1. AT5G49360.1 [+] show detail - beta-xylosidase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
    FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
    FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
    HMMPfam Glycoside hydrolase, family 3, N-terminal 3.6e-55
    HMMPfam Glycoside hydrolase, family 3, C-terminal 1.7e-52
    superfamily Glycoside hydrolase, catalytic core 1.4e-97
    superfamily Glycoside hydrolase, family 3, C-terminal 2.3e-30
    Gene3D Glycoside hydrolase, family 3, N-terminal 9.8e-85
    Gene3D no description 4.3e-52

    See the detailed result >

    AT5G49360.1

    Model type
    Protein coding
    Short Description
    beta-xylosidase 1
    Curator Summary
    Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
    Computational Description
    beta-xylosidase 1 (BXL1); FUNCTIONS IN: alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: seed coat development; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 2 (TAIR:AT1G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR