F20232

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20232

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20232

Determination of introduced cDNA(s)

  • RAFL09-07-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-E15 - Resource: pda09629

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-E15 - full reading 
    AAAAAAAACA CAAACATCAC ATGTATACAC ACATATAGTT ACAAACACAC 
    ATACACAAAA CACAGATATA TAAAAATGTC TTGTTATAAT AAAGCACTAT 
    TGATCGGCAA CAAAGTCGTC GTTATACTTG TATTCCTCTT ATGTTTGGTT 
    CACTCGTCAG AGTCACTTCG ACCACTGTTT GCATGTGATC CAGCAAACGG 
    GTTAACCCGG ACGCTCCGGT TCTGTCGGGC CAATGTACCG ATCCATGTGA 
    GAGTTCAAGA TTTGCTCGGA AGGCTCACGT TGCAGGAGAA GATCCGCAAC 
    CTCGTCAACA ATGCTGCCGC CGTACCACGT CTCGGTATTG GAGGCTATGA 
    GTGGTGGTCC GAGGCTCTCC ACGGCATTTC CGACGTTGGT CCAGGCGCTA 
    AGTTCGGTGG TGCTTTTCCC GGTGCCACCA GCTTCCCTCA GGTCATCACC 
    ACCGCAGCTT CTTTCAACCA GTCTCTATGG GAAGAGATCG GACGGGTGGT 
    GTCTGATGAG GCAAGAGCTA TGTACAATGG TGGCGTGGCC GGTCTGACAT 
    ATTGGAGTCC GAATGTGAAT ATCTTGAGGG ACCCGCGGTG GGGCCGAGGC 
    CAAGAAACTC CCGGAGAAGA TCCTATCGTT GCCGCAAAAT ATGCCGCCAG 
    CTACGTCCGG GGACTTCAGG GTACTGCTGC CGGTAACCGC CTTAAAGTCG 
    CCGCATGTTG CAAACATTAC ACTGCTTATG ATCTTGATAA TTGGAATGGC 
    GTCGACCGTT TCCACTTCAA CGCTAAGGTC ACCCAACAAG ATTTAGAGGA 
    CACATACAAC GTGCCATTCA AATCATGTGT TTACGAAGGA AAAGTAGCGA 
    GTGTAATGTG TTCGTACAAC CAAGTCAATG GAAAGCCCAC ATGTGCTGAT 
    GAAAATCTCT TAAAGAACAC TATTCGTGGT CAATGGCGTC TCAATGGGTA 
    CATTGTCTCA GATTGTGACT CTGTTGATGT TTTCTTCAAC CAACAACATT 
    ACACTAGCAC TCCGGAAGAA GCCGCCGCCA GATCCATTAA AGCCGGTTTG 
    GACTTGGACT GCGGGCCGTT TTTGGCGATT TTCACGGAAG GTGCAGTGAA 
    GAAAGGATTG TTAACGGAGA ATGACATCAA TTTAGCACTT GCTAATACAT 
    TAACAGTCCA AATGAGACTT GGTATGTTTG ATGGTAACCT TGGGCCGTAC 
    GCTAATCTTG GGCCAAGAGA TGTTTGTACT CCGGCCCATA AACATTTAGC 
    TCTTGAAGCA GCCCATCAAG GGATTGTTCT TCTCAAAAAC TCTGCTCGCT 
    CTCTTCCACT CTCCCCCAGA CGCCACCGCA CCGTCGCCGT GATTGGTCCA 
    AACTCCGACG TCACTGAGAC TATGATCGGC AACTATGCAG GGAAAGCATG 
    CGCCTATACG TCGCCGTTGC AAGGGATTTC AAGATACGCG AGGACACTTC 
    ACCAAGCTGG CTGTGCCGGC GTGGCTTGCA AAGGGAACCA AGGATTTGGT 
    GCAGCGGAGG CAGCGGCGCG TGAAGCCGAC GCGACGGTTC TTGTGATGGG 
    ATTAGATCAG TCGATAGAGG CAGAGACACG AGATCGAACC GGGCTTCTCT 
    TACCGGGTTA TCAACAAGAC CTAGTGACCC GTGTAGCTCA AGCTTCTAGA 
    GGTCCAGTCA TTTTGGTCCT TATGAGTGGT GGACCAATCG ATGTAACCTT 
    CGCTAAGAAT GATCCTCGTG TTGCTGCCAT CATTTGGGCT GGGTATCCGG 
    GTCAAGCGGG TGGAGCTGCC ATCGCCAATA TCATCTTTGG TGCTGCTAAT 
    CCCGGAGGAA AACTACCAAT GACATGGTAT CCACAAGATT ACGTGGCCAA 
    AGTGCCAATG ACGGTAATGG CCATGAGAGC ATCCGGTAAT TATCCAGGAA 
    GGACATACAG ATTCTACAAA GGTCCAGTAG TATTTCCATT TGGGTTCGGT 
    TTAAGTTACA CTACCTTCAC TCATAGTTTG GCCAAAAGCC CATTGGCCCA 
    ACTATCAGTT TCACTCTCCA ATCTCAACTC TGCCAATACC ATTCTCAACT 
    CTTCATCACA CTCCATCAAA GTGTCTCACA CCAACTGCAA TTCATTTCCG 
    AAAATGCCCC TTCACGTCGA AGTATCAAAC ACAGGTGAAT TCGATGGAAC 
    ACACACGGTG TTTGTATTTG CTGAGCCGCC GATAAACGGA ATAAAAGGAT 
    TGGGTGTGAA CAAACAATTG ATAGCGTTCG AGAAGGTTCA TGTCATGGCA 
    GGGGCAAAAC AGACCGTTCA AGTTGATGTT GATGCTTGCA AGCATCTTGG 
    TGTAGTGGAT GAGTATGGAA AGAGGAGAAT CCCAATGGGT GAGCATAAGC 
    TGCACATTGG TGACCTTAAA CATACTATTT TGGTCCAACC GCAACTTTGA 
    CGGACGCATA AAAAAACCAA CAAATAAGGA AAGCATTTTA ACAAAGTGGA 
    GTGTTTCCTC TTATTTATAT AATATAGAGA GATAGGTTTA TTTTCTTATG 
    AAATTATTAC TCAAGAAAGT ATGAATTTGT AAAGAACCAC CAAAGGGTTG 
    CTTCTTGGTT GTGTCTTTTT TCCTTTAATT TTTTTTTGGA C

    Gene models with high sequence identity

    1. AT5G49360.1 [+] show detail - beta-xylosidase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
    FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
    FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
    HMMPfam Glycoside hydrolase, family 3, N-terminal 3.6e-55
    HMMPfam Glycoside hydrolase, family 3, C-terminal 1.7e-52
    superfamily Glycoside hydrolase, catalytic core 1.4e-97
    superfamily Glycoside hydrolase, family 3, C-terminal 2.3e-30
    Gene3D Glycoside hydrolase, family 3, N-terminal 9.8e-85
    Gene3D no description 4.3e-52

    See the detailed result >

    AT5G49360.1

    Model type
    Protein coding
    Short Description
    beta-xylosidase 1
    Curator Summary
    Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
    Computational Description
    beta-xylosidase 1 (BXL1); FUNCTIONS IN: alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: seed coat development; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 2 (TAIR:AT1G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR