F20311

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20311

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F20311

Determination of introduced cDNA(s)

  • RAFL06-11-A22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-A22 - Resource: pda07536

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-11-A22 - full reading 
    GAGAATCCCA ATGAGGATCT TACCCGAACC TCGAGGTTCG GTTCCGTGTC 
    TTCTCCTTCT TGTGTCGGTT CTCTTATCAG CGACTCTCTC ACTCGCTCGT 
    GTCGTCGAAG TTGTCGGTTA CGCCGAGAGC AAGATCAAAA CCCCCCATGC 
    ATTTTCAGGA CTTCGAGTGA CGATCGACTG TAAGGTGAAT AAAGGCCATT 
    TTGTTACAAA AGGTTCGGGA AACATTGACG ACAAAGGAAA GTTTGGTCTT 
    AATATTCCTC ATGACATTGT CTCCGACAAC GGAGCGTTAA AGGAGGAGTG 
    TTACGCTCAG CTTCACAGCG CGGCGGGAAC ACCTTGTCCG GCTCACGACG 
    GCCTTGAGTC CACCAAGATC GTGTTTTTAT CCAAATCCGG GGATAAACAC 
    ATTTTGGGTC TCAAACAAAA TCTGAAATTT TCACCGGAGA TTTGCGTTTC 
    CAAATTCTTC TGGCCTATGC CTAAGTTGCC TCCTTTTAAG GGCTTTGATC 
    ATCCTTTCCC TTTACCTCCA CCTTTGGAAC TTCCACCGTT TCTCAAGAAG 
    CCATGTCCAC CTAAATACAG TCCTCCTGTG GAGGTTCCAC CCCCGGTACC 
    AGTTTACGAG CCGCCGCCAA AGAAAGAGAT TCCCCCGCCG GTTCCGGTTT 
    ACGATCCACC GCCTAAGAAA GAGGTTCCAC CACCTGTCCC AGTTTACAAG 
    CCACCACCAA AGGTGGAGCT TCCACCGCCT ATTCCTAAGA AGCCTTGTCC 
    ACCTAAACCG CCGAAGATAG AGCACCCACC TCCGGTTCCG GTTTACAAGC 
    CACCGCCAAA GATAGAGAAG CCACCTCCGG TTCCGGTTTA CAAGCCCCCG 
    CCAAAGATAG AGCACCCACC TCCCGTTCCG GTACACAAGC TACCGAAGAA 
    GCCATGTCCG CCTAAGAAAG TTGATCCACC GCCGGTGCCA GTCCACAAAC 
    CACCAACGAA GAAGCCTTGT CCGCCTAAGA AAGTTGATCC ACCGCCGGTT 
    CCAGTCCACA AGCCGCCGCC AAAGATAGTC ATTCCACCGC CGAAGATAGA 
    GCACCCACCT CCAGTTCCGG TTTACAAGCC GCCGCCGAAG ATAGAGCATC 
    CACCAATCTA CATACCACCA ATTGTGAAGA AGCCGTGTCC TCCGCCGGTA 
    CCAATATACA AACCACCGGT TGTGATCCCC AAGAAGCCAT GCCCTCCGCC 
    GGTACCAGTA TACAAACCAC CGGTAGTGGT GATTCCAAAG AAGCCATGTC 
    CGCCACTTCC ACAGCTCCCA CCACTTCCAA AGTTTCCACC TCTTCCTCCT 
    AAATACATTC ACCACCCCAA GTTCGGGAAA TGGCCTCCGT TGCCTCCACA 
    CCCTTGAGAA ACATTAAATA CGTATATATA GATATACGTA TACTCATGTA 
    TAATCAACGT GTTTGCCTTT TTTTAATATT TTATCTTTGC ATATGTTTTA 
    TATCTTGTTT CTTTTGTTGG CTTTGAGTTC TCTTTGTGTA GACTGGTTGT 
    TTATATTCCC GCAATCTTCC AACAATAATA TGGTAATGAT

    Gene models with high sequence identity

    1. AT4G38770.1 [+] show detail - proline-rich protein 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pollen Ole e 1 allergen/extensin 1.9e-12
    FPrintScan PRICHEXTENSN 9.8e-09
    FPrintScan PRICHEXTENSN 9.8e-09
    FPrintScan PRICHEXTENSN 9.8e-09
    FPrintScan PRICHEXTENSN 9.8e-09

    See the detailed result >

    AT4G38770.1

    Model type
    Protein coding
    Short Description
    proline-rich protein 4
    Curator Summary
    Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
    Computational Description
    proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR