F20342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20342

Determination of introduced cDNA(s)

RAFL04-14-C14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-C14 - Resource: pda00279

full reading [+] show sequence

ATAACTCACA CTCTCTCTTA TCTCCTTTCC TTTCATTGTA GTTAACGAAA 
AGATTACGAT AATGGCAACA TCAGCTATCC AGCAATCCTC CTTCGCCGGC 
CAAACGGCTC TCAAGCCCTC CAACGAACTC CTCCGCAAGG TTGGTGTATC 
CGGTGGTGGC CGTGTGACCA TGCGTCGTAC CGTCAAGTCT ACTCCTCAAA 
GCATCTGGTA CCAAATCCAC TCTCTCTGGC TCTTACCTAA CCTATCATTA 
ACTTTTCAGA TATGTCTAAT CACCAAATTC ATCTTGTAAC AGGTACGGAC 
CAGACCGTCC CAAGTACTTA GGACCATTCT CGGAGAATAC ACCGTCCTAC 
CTAACCGGAG AATACCCCGG AGACTACGGC TGGGACACCG CTGGACTCTC 
GGCTGACCCG GAGACATTCG CTAAGAACCG TGAGCTTGAA GTAATCCACA 
GCAGATGGGC TATGTTGGGT GCTCTCGGAT GCACATTCCC TGAGATTCTC 
TCCAAGAACG GTGTTAAATT CGGAGAAGCC GTGTGGTTCA AGGCAGGTTC 
TCAGATTTTC TCAGAAGGAG GTCTTGATTA CCTCGGAAAC CCTAACTTGA 
TCCACGCGCA AAGCATCTTA GCCATCTGGG CTGTTCAAGT TGTGCTCATG 
GGGTTCATTG AAGGCTACAG AATCGGAGGT GGACCTCTCG GAGAAGGGCT 
TGACCCGCTT TACCCCGGAG GTGCGTTCGA CCCATTGAAC TTGGCTGAGG 
ATCCAGAGGC TTTCTCTGAG CTGAAGGTGA AGGAGCTTAA GAACGGTCGT 
CTTGCCATGT TCTCTATGTT TGGATTCTTT GTCCAAGCCA TTGTTACTGG 
TAAAGGTCCC ATTGAGAACT TATTTGATCA TTTGGCTGAT CCTGTGGCTA 
ACAACGCCTG GTCTTACGCT ACTAACTTTG TCCCCGGAAA TTAATTATCT 
TATGTATTTG CTTCATAATC TCTCTGCTTT GTAAAGTCGT GAATGTACTT 
ATTGGTGTTT TATGTGAGTT TGGTACTTAA GAAAAAAAAA AAAAAAA

Gene models with high sequence identity

AT2G05100.1 [+] show detail - photosystem II light harvesting complex gene 2.1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Chloroa_b-bind	1.6e-49
HMMPanther	Chlorophyll A-B binding protein	3.3e-170
HMMPanther	Chlorophyll A-B binding protein	1.7e-11
superfamily	Chlorophyll a-b binding protein	8.6e-80

See the detailed result >

AT2G05100.1

Model type: Protein coding
Short Description: photosystem II light harvesting complex gene 2.1
Curator Summary: Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
Computational Description: photosystem II light harvesting complex gene 2.1 (LHCB2.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to salt stress, response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.2 (TAIR:AT2G05070.1); Has 2375 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2059; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Link: InterPro Scan - TAIR