F20434

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Original: F20434

Determination of introduced cDNA(s)

  • RAFL09-18-I07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-I07 - Resource: pda05465

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-I07 - full reading 
    GATTTCTTCT TCTTCTTCAG AATTCAGATC AGATCTCCGG CGATAATCTT 
    TGAGATCTGA AATTTCTTAC AATCAGGAGA GAAAGATGTA CGGATTCGAG 
    GCGCTTACGT TCAATATCCA TGGGGGATAC TTGGAGGCGA TCGTCAGAGG 
    CCACCGTGCT GGGCTTCTCA CCACCGCCGA TTACAACAAT CTATGTCAGT 
    GTGAGAACCT AGACGATATC AAGATGCATC TCTCTGCCAC CAAATACGGT 
    CCTTACCTCC AAAACGAACC ATCACCTCTG CATACCACTA CAATTGTGGA 
    GAAGTGTACG CTCAAGCTTG TTGATGACTA CAAGCATATG CTTTGCCAAG 
    CTACTGAGCC AATGTCTACC TTTTTAGAGT ACATCAGATA TGGTCATATG 
    ATTGACAATG TCGTGCTCAT TGTTACTGGA ACCCTTCACG AGAGAGATGT 
    TCAAGAGTTG ATCGAGAAAT GTCACCCTTT AGGCATGTTT GACAGTATTG 
    CTACACTAGC TGTTGCTCAG AACATGCGGG AACTCTATAG GTTGGTGCTT 
    GTGGACACTC CTCTGGCTCC ATACTTTTCT GAATGCCTAA CATCAGAGGA 
    TCTCGATGAC ATGAACATAG AGATTATGAG GAATACCCTC TACAAAGCAT 
    ACCTTGAGGA TTTTTACAAC TTCTGTCAGA AACTTGGTGG CGCAACAGCA 
    GAGATTATGT CTGACCTTTT GGCCTTTGAA GCCGACAGGA GAGCAGTGAA 
    TATCACTATC AACAGCATTG GCACTGAGCT CACAAGAGAA GACAGGAAGA 
    AACTGTACTC CAACTTTGGT CTCCTCTATC CATATGGCCA CGAGGAGCTT 
    GCTATCTGTG AAGACATAGA TCAGGTTCGT GGTGTTATGG AAAAATACCC 
    TCCGTATCAA GCTATATTCT CCAAGATGTC TTATGGAGAA AGCCAGATGC 
    TCGACAAGGC ATTTTATGAA GAAGAAGTCA GAAGGCTTTG CTTAGCCTTT 
    GAGCAGCAGT TCCATTACGC GGTATTCTTT GCGTATATGA GGTTGCGGGA 
    GCAGGAGATC AGGAACCTGA TGTGGATATC TGAATGTGTT GCACAGAACC 
    AGAAGTCCAG GATCCACGAT AGTGTGGTCT ACATGTTCTG AGTCTGGTAA 
    GAAGTGTAAT CTGTCTGAAA AAAACGGAGA ATAAGAGGAA CCCATATGGT 
    TGTTGTTGGT TTTCTTCATT ACTCCATTTT TATTAGAGAA TCTGCTGTAC 
    AATCTTGCGG TCTACATTCA CTGTTTATGT CGCTCTGCGT GTATCAAAAA 
    CTGCTCAATA AGAATCTATC CAATTTGTTT GTTTTTTTTC TCCCACATAT 
    TCTTGCTTGG TTCCGGTAAA CTCTTTGTAA TGTCGAATAA TTTACGATGT 
    ATACGAATTA CTTTTGGCGG CC

    Gene models with high sequence identity

    1. AT3G28715.1 [+] show detail - ATPase, V0/A0 complex, subunit C/D
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, V0/A0 complex, subunit C/D 4.2e-93
    superfamily ATPase, V0/A0 complex, subunit C/D 9.6e-97
    HMMPIR ATPase, V0 complex, subunit D 4.1e-232
    HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT AC39 1.4e-210

    See the detailed result >

    AT3G28715.1

    Model type
    Protein coding
    Short Description
    ATPase, V0/A0 complex, subunit C/D
    Computational Description
    ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28710.1); Has 636 Blast hits to 635 proteins in 308 species: Archae - 22; Bacteria - 2; Metazoa - 293; Fungi - 152; Plants - 74; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR